Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00458
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 95 5e-20
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 95 5e-20
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 54 8e-08
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 51 6e-07
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 51 7e-07
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 48 5e-06
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 42 3e-04
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 42 4e-04
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 38 0.005
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 36 0.022
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 33 0.12
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 33 0.21
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 33 0.21
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 30 1.5
At3g59120.1 68416.m06591 DC1 domain-containing protein contains ... 29 1.9
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 29 3.4
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 3.4
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 29 3.4
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 29 3.4
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 29 3.4
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 29 3.4
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 28 4.4
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 27 7.8
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/67 (64%), Positives = 55/67 (82%)
Frame = +1
Query: 55 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 234
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 235 LLHEMQI 255
LL EMQI
Sbjct: 62 LLKEMQI 68
Score = 64.5 bits (150), Expect = 6e-11
Identities = 34/89 (38%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 434
Q+PTA +IAR V+ IGEL+KQ++ I EG+HPR++ +GF+IA+
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 435 SLEVLESMKISI----EIARENLVDVART 509
+L+ L++ K + E+ +E L VART
Sbjct: 129 TLQFLDNFKTPVVMGDEVDKEILKMVART 157
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/40 (52%), Positives = 30/40 (75%)
Frame = +2
Query: 509 SLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVDIM 628
+L+TK++ LAD LTD V++VL IR P + +DL MV+IM
Sbjct: 158 TLRTKLYEGLADQLTDIVVNSVLCIRKPEEAIDLFMVEIM 197
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/67 (64%), Positives = 55/67 (82%)
Frame = +1
Query: 55 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNV 234
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT+KMLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 235 LLHEMQI 255
LL EMQI
Sbjct: 62 LLKEMQI 68
Score = 62.1 bits (144), Expect = 3e-10
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 434
Q+PTA +IAR V+ IGEL+KQ++ I EG+HPR++ +GF+IA+
Sbjct: 69 QNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRA 128
Query: 435 SLEVLESMKISI----EIARENLVDVART 509
+L+ L++ K + E +E L VART
Sbjct: 129 TLQFLDTFKTPVVMGDEPDKEILKMVART 157
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = +2
Query: 509 SLKTKVHPSLADVLTDACVDAVLTIRTPGKPVDLHMVDIM 628
+L+TK++ LAD LTD V++VL IR P +P+DL MV+IM
Sbjct: 158 TLRTKLYEGLADQLTDIVVNSVLCIRKPQEPIDLFMVEIM 197
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 54.0 bits (124), Expect = 8e-08
Identities = 20/48 (41%), Positives = 33/48 (68%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQIS 258
NI A+K + D+++T LGP+ +KML+ G I +T DGN +L E+ ++
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDVA 71
Score = 37.5 bits (83), Expect = 0.007
Identities = 19/73 (26%), Positives = 33/73 (45%)
Frame = +3
Query: 258 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 437
HP A + ++L GE+L A+ F+ + HP +I + A S
Sbjct: 72 HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRAYIKALEDS 131
Query: 438 LEVLESMKISIEI 476
+ VL+ + +SI+I
Sbjct: 132 IAVLDKIAMSIDI 144
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/52 (42%), Positives = 38/52 (73%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQISTLQP 270
NI++A+ + D ++T+LGPKG KM+ + G++ IT DG +L++M++ LQP
Sbjct: 33 NINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEV--LQP 82
Score = 44.0 bits (99), Expect = 8e-05
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +3
Query: 333 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKISIEIA-RENLVDVART 509
V++ G LLK+ ++ G+HP +I++ A K++++L +M + +E+ R++LV A T
Sbjct: 106 VVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTAMAVPVELTDRDSLVKSAST 165
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/55 (41%), Positives = 33/55 (60%)
Frame = +1
Query: 91 RAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
R A NI+A K + +++++LGPKG KML GDI IT DG +L +M +
Sbjct: 25 RGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDV 79
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 333 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKISIEIARENLVDVART 509
V++ G LL+QA+ + G+HP I EG+++A ++E LE + E N + +T
Sbjct: 106 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQT 164
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 48.0 bits (109), Expect = 5e-06
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +1
Query: 115 NISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
N+ A + + +++KT+LGP G KMLV GD+ IT DG +L +++
Sbjct: 24 NVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEV 70
Score = 36.3 bits (80), Expect = 0.017
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 255 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 434
+HP A ++ V++ ELLK+A+ + +HP I G+ +A +
Sbjct: 71 EHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRE 130
Query: 435 SLEVLESMKIS-IE-IARENLVDVART 509
S + +E ++ +E + + L++ A+T
Sbjct: 131 SCKYIEEKLVTKVEKLGKVPLINCAKT 157
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +1
Query: 58 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVL 237
I LL + ++ L NI+A + DV++T LGP+G K++ G + I+ DG +
Sbjct: 9 IILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATI 68
Query: 238 LHEMQI 255
+ + I
Sbjct: 69 MKLLDI 74
Score = 35.1 bits (77), Expect = 0.039
Identities = 18/72 (25%), Positives = 32/72 (44%)
Frame = +3
Query: 258 HPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNKS 437
HP A ++ VLL E LK+A FI +G+H + + + A +
Sbjct: 76 HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLA 135
Query: 438 LEVLESMKISIE 473
+ ++ + +SIE
Sbjct: 136 IAKVKELAVSIE 147
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 255 QHPTASLIARXXXXXXXXXXXXXXXXVLLIGELLKQADIFISEGLHPRIITEGFDIARNK 434
QHP A L+ + GELL+ A+ I GLHP I G+ A +K
Sbjct: 79 QHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSK 138
Query: 435 SLEVLESM 458
++E+LE +
Sbjct: 139 AVEILEQL 146
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +3
Query: 333 VLLIGELLKQADIFISEGLHPRIITEGFDIARNKSLEVLESMKISIEIARENLVDVART 509
V++ G LL+QA+ + G+HP I EG+++A ++E LE + E N + +T
Sbjct: 30 VVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQT 88
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 35.9 bits (79), Expect = 0.022
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Frame = +3
Query: 333 VLLIGELLKQADIFISEGLHPRIITEGF----DIARNKSLEVLESMKISIEIARENLVDV 500
V+L GELL++A+ ++ +HP I G+ + ARN L+ + K + E R +L+ +
Sbjct: 98 VVLAGELLREAEKLVASKIHPMTIIAGYRMASECARNALLKRVIDNKDNAEKFRSDLLKI 157
Query: 501 ART 509
A T
Sbjct: 158 AMT 160
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 82 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 228
E +A A+ + + + D +K +GPKG ++ G K+TKDG
Sbjct: 35 EIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDG 83
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 103 ALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 228
A A + + + +K +GPKG ++ S G KITKDG
Sbjct: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDG 83
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 100 QALAVNISAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDG 228
+A A+ + + + D +K +GPKG ++ G K+TKDG
Sbjct: 42 EARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDG 84
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 91 RAAQALAVNISAAKGIQDVMKTNLGPKGTMK 183
+ A NISA K + +++++LGPKG K
Sbjct: 25 KGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g59120.1 68416.m06591 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 602
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 611 ADQQVCLESEW*VPHQRKHQLAHLQGLG 528
+ + +CL ++ PH +KH+ HL +G
Sbjct: 565 SSRPICLTCQYHCPHHKKHEKTHLPSIG 592
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
+ D++ LGPKG +L S G +I DG + E+++
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 113
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 28.7 bits (61), Expect = 3.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -2
Query: 147 YILNSFSCGYIYSKCLCSTSELGF 76
+I+ S+ G +Y C C +S+LG+
Sbjct: 630 FIMKSYDGGEVYCSCYCVSSQLGY 653
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
+ D++ LGPKG +L S G +I DG + E+++
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 113
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
+ D++ LGPKG +L S G +I DG + E+++
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 117
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 136 IQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
+ D++ LGPKG +L S G +I DG + E+++
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVEL 117
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 445 TSNDLLRAMSKPSVMILGCKPSLMNMSACLSSSP 344
TS+ L+ + K + IL C P L N A SS+P
Sbjct: 628 TSSQLVEEIEKVNAAILDCNPKLQNGEAKDSSAP 661
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 121 SAAKGIQDVMKTNLGPKGTMKMLVSGAGDIKITKDGNVLLHEMQI 255
+ A + ++ LGPKG +L + G +I DG +L E+++
Sbjct: 57 AGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIEL 101
>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 686
Score = 27.5 bits (58), Expect = 7.8
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 266 CRVLICISCNKTLPSLVIFMSPAPETNIFIVP 171
C ICISC P LV+ E + ++P
Sbjct: 227 CNFSICISCQGNPPPLVVVTPKTHEHQLHLIP 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,374,364
Number of Sequences: 28952
Number of extensions: 222475
Number of successful extensions: 609
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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