Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00457
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 116 2e-27
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 116 3e-27
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 26 3.0
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 26 3.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.2
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 6.8
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 6.8
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 6.8
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 116 bits (279), Expect = 2e-27
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +2
Query: 2 PKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWR 181
PK+NR AI++ LF++GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++ W
Sbjct: 4 PKENRKAIHQALFQQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWG 62
Query: 182 HFYWYLTNEGIEYLRIFLHLPPEI 253
FY+ LTNEG+EYLR +LHLP E+
Sbjct: 63 WFYYTLTNEGVEYLREYLHLPAEV 86
Score = 34.3 bits (75), Expect = 0.011
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 256 PATLKRSVRTETVRRGPVGRPDAPARSAEDRSAYRRTPAAPGVAPHDKKAD-VGPGSADL 432
PAT KR VR R GRP+ RS+ + YRR +KK D PG
Sbjct: 88 PATHKRQVRPAAPR---AGRPEPRERSSAADAGYRRA---------EKKDDGAAPGGFAP 135
Query: 433 EFKGGYGR 456
F+GG+GR
Sbjct: 136 SFRGGFGR 143
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 116 bits (278), Expect = 3e-27
Identities = 52/84 (61%), Positives = 68/84 (80%)
Frame = +2
Query: 2 PKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQFAWR 181
PK+NR AI++ LF +GV+VAKKD++ PKH E+ +PNLQVIKA QSL SRGY+K ++ W
Sbjct: 4 PKENRKAIHQALFSQGVLVAKKDFNLPKHPEVG-VPNLQVIKACQSLDSRGYLKTRYNWG 62
Query: 182 HFYWYLTNEGIEYLRIFLHLPPEI 253
FY+ LTNEG+EYLR +LHLP E+
Sbjct: 63 WFYYTLTNEGVEYLREYLHLPAEV 86
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 220 LENILAPSS*NWPATLKRSVRTETVRRGPVGRPDAPAR--SAEDRSAYRRTPA 372
L+ + P S NW K+ + E ++ RPD + + R+ R TPA
Sbjct: 586 LDEDITPQSSNWQTVAKQIIFPEAYKKKDALRPDVSEKVFTVHVRANKRLTPA 638
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 350 DLSSAERAGASGRPTGPRRT 291
DLSSAER A GRP + T
Sbjct: 221 DLSSAERVVAGGRPLKDKET 240
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 5.2
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = -1
Query: 437 NSRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVA 258
+S S+ P TS+ +S ++ ++ + S + + S PT T+S + S +
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPS-S 352
Query: 257 GQFQEEGARIFSSIQYPHWLGTSKSASRQTV 165
F + SS + + +S S S T+
Sbjct: 353 SSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 75 MHRSILN*RRFLTSKLSKLCNHSSPEVM-SKN 167
+H + L+ RFL + L ++C H+ +M SKN
Sbjct: 895 LHPAHLSVFRFLIAHLGRVCKHAEKNLMNSKN 926
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 316 PDAPARSAEDRSAYRRTPAAPGVAPHDKKADVGPGSAD 429
P+A S+ +Y + A+ P +DVG GSA+
Sbjct: 321 PEASMESSAPTESYDKPAASEEQQPLQNHSDVGNGSAE 358
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.8
Identities = 25/75 (33%), Positives = 32/75 (42%)
Frame = -1
Query: 437 NSRSAEPGPTSAFLS*GATPGAAGVRLYADLSSAERAGASGRPTGPRRTVSVRTERLSVA 258
N+ ++ P P S+ S PG A L+ + SSA A+ P SV ERL A
Sbjct: 312 NTATSVPAPYSSAASVNVVPGHATTILHHEESSALPPTAAWAKLSP----SVLQERLRAA 367
Query: 257 GQFQEEGARIFSSIQ 213
Q A SS Q
Sbjct: 368 VNQQPLDALKSSSTQ 382
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,253
Number of Sequences: 5004
Number of extensions: 37011
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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