Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00456
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    29   0.42 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   2.9  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   9.0  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   9.0  

>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -3

Query: 212 LPASLMDIGNVKGTSKP-QRTVEEYPFRSSLEG--HVITLSQHSGGEFMLEQY 63
           LP  ++D   ++  S P QR V E+      EG  HV+ L+   GG   LEQY
Sbjct: 467 LPVVILDNFQLRKLSNPMQRVVAEWAGNLVKEGIAHVLMLTPDVGGTKSLEQY 519


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -1

Query: 427 SYQLIYSYYTFFLVFCFVYL 368
           SY+ I ++ TFFL+F F+++
Sbjct: 665 SYREIVAFITFFLLFAFIFV 684


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 499 ILTFALKIHILSSYCFCTFDF 437
           I +F+  I IL  YCF  FD+
Sbjct: 674 ISSFSRTIEILIDYCFTIFDY 694


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 422 PINLQLLYFFFGVLFCLFRVILVVYRYLSIRYGRNRY 312
           P   QL+     VLF +F  + +V  YL++RY    Y
Sbjct: 27  PEEKQLINKRLAVLFPIFGGVTLVLMYLALRYLSKEY 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,818
Number of Sequences: 5004
Number of extensions: 44918
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)