Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00456
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120...    29   2.3  
04_04_0297 - 24219497-24219853,24221242-24222414                       29   2.3  
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825...    27   9.2  

>08_01_0153 -
           1200121-1200465,1201693-1202920,1204517-1204602,
           1205145-1205272,1205957-1205969
          Length = 599

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 10  LKPLFHPKCPSRYH*YVPYCSSMNSPPECWLS 105
           L PL  PKC S YH  + YC +     +C L+
Sbjct: 395 LIPLHKPKCVSMYHQQLSYCVTQFVEKDCKLA 426


>04_04_0297 - 24219497-24219853,24221242-24222414
          Length = 509

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 10  LKPLFHPKCPSRYH*YVPYCSSMNSPPECWLS 105
           L PL  PKC S YH  + YC +     +C L+
Sbjct: 301 LIPLHKPKCVSMYHQQLSYCITQFVEKDCKLA 332


>03_06_0648 +
           35280492-35280645,35281742-35281820,35282491-35282593,
           35282695-35282815,35283144-35283232,35283324-35283473,
           35285842-35287161
          Length = 671

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 10  LKPLFHPKCPSRYH*YVPYCSSMNSPPECWLS 105
           L PL  PKC   YH  + YC +     +C L+
Sbjct: 576 LIPLHKPKCIGMYHQQLSYCITQFVEKDCKLA 607


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,269,157
Number of Sequences: 37544
Number of extensions: 262058
Number of successful extensions: 505
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)