Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00456
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 31 0.58
SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8) 29 3.1
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94) 29 4.1
SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21) 28 7.1
SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_18868| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_46351| Best HMM Match : EGF_CA (HMM E-Value=2.3e-14) 27 9.4
>SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 19 LFHPKCPSRYH*YVPYCSSMNSPPECWLSVMTCPSNEDL--NGYSSTVRC 162
+ KCPS YH + + EC L V TCP++ D N S T RC
Sbjct: 37 IIRAKCPSPYHALMISLCFDSDIDECALGVATCPASADCVNNDGSYTCRC 86
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -1
Query: 502 PILTFALKIHILSSYCFCTFDFITFSYQLIYSYYTFFLVFCFVYLE*Y 359
P+L + YC+C + + Y Y YY + +C+ Y Y
Sbjct: 465 PVLRYCYCYCYCYYYCYCYCYYYCYYYCYCYCYYCCYYCYCYYYYHHY 512
>SB_59161| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F FIT + +IY+Y + F++ V+ ++ Y LFV + I +R
Sbjct: 243 YAYCSLFVFITIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVFITIVHAR 298
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = -1
Query: 499 ILTFALKIHILSSYCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLF 332
+L + + Y +C+ F FIT + +IY+Y + F+ V+ ++ Y LF
Sbjct: 190 VLITIVHARLFMIYAYCSLFVFITIVHARLFMIYAYCSLFVFITIVHARLFMIYAYCSLF 249
Query: 331 VMVEI 317
V + I
Sbjct: 250 VFITI 254
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEI 317
Y +C+ F FIT + +IY+Y + F++ V+ ++ Y LFV++ I
Sbjct: 103 YAYCSLFVFITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITI 154
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV++ I +R
Sbjct: 43 YAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHAR 98
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV++ I +R
Sbjct: 143 YAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHAR 198
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F FIT + +IY+Y + F+ V+ ++ Y LFV++ I +R
Sbjct: 223 YAYCSLFVFITIVHARLFMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITIVHAR 278
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV + I +R
Sbjct: 163 YAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVFITIVHAR 218
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEI 317
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV + I
Sbjct: 63 YAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHARPFMIYAYCSLFVFITI 114
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Frame = -1
Query: 499 ILTFALKIHILSSYCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLF 332
+L + + Y +C+ F IT + +IY+Y + F+ V+ ++ Y LF
Sbjct: 170 VLITIVHARLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVFITIVHARLFMIYAYCSLF 229
Query: 331 VMVEIGTSR 305
V + I +R
Sbjct: 230 VFITIVHAR 238
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV++ I +R
Sbjct: 23 YAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR 78
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV++ I +R
Sbjct: 123 YAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR 178
>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
Length = 347
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV++ I +R
Sbjct: 142 YAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHAR 197
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 481 KIHILSSYC--FCTFDFITFSYQLIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEI 317
++ ++ +YC F + +IY+Y + F++ V+ ++ Y LFV++ I
Sbjct: 77 RVSVIYAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITI 133
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEI 317
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV + I
Sbjct: 162 YAYCSLFVLITIVHARLFMIYAYCSLFVLITIVHARLFMIYAYCSLFVFITI 213
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -1
Query: 499 ILTFALKIHILSSYCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLF 332
+L + + Y +C+ F IT + +IY+Y + F++ V+ ++ Y LF
Sbjct: 89 VLITIVHARLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLF 148
Query: 331 VMVEI 317
V++ I
Sbjct: 149 VLITI 153
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTSR 305
Y +C+ F IT + +IY+Y + F++ V+ ++ Y LFV++ I +R
Sbjct: 122 YAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHACLFMIYAYCSLFVLITIVHAR 177
>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
Length = 310
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = -1
Query: 499 ILTFALKIHILSSYCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLF 332
+L + + Y +C+ F IT + +IY+Y + FL+ V+ ++ Y LF
Sbjct: 89 VLITIVHARLFMIYAYCSLFVLITIVHACLFMIYAYCSLFLLITIVHACLFMIYAYCSLF 148
Query: 331 VMVEI 317
V++ I
Sbjct: 149 VLITI 153
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 481 KIHILSSYC--FCTFDFITFSYQLIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEIGTS 308
++ ++ +YC F + +IY+Y + F++ ++ ++ Y LFV++ I +
Sbjct: 177 RLFMIHAYCSLFVLITIVHAGLFMIYAYCSLFVLITIIHACLFMIYAFCSLFVLITIVHA 236
Query: 307 R 305
R
Sbjct: 237 R 237
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 460 YCFCT-FDFITFSYQ---LIYSYYTFFLVFCFVYLE*YLSYTVTYLFVMVEI 317
Y FC+ F IT + +IY+Y + F+ V+ ++ Y LFV++ I
Sbjct: 222 YAFCSLFVLITIVHARLFMIYAYCSLFVFITIVHACLFMIYAYCSLFVLITI 273
>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
Length = 781
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 132 ILVRRTCHNTQPTLWRRVHARAIWYVSMISGRALWMKQ 19
+LVR TCH P W AR + ++SG L K+
Sbjct: 398 LLVRMTCHLLLPVYWNYPAARITLQI-LVSGNELGCKE 434
>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1409
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 215 ELPASLMDIGNVKGTS-KPQRTVEEYPFRSSLEGH 114
ELPAS D+ V GTS + Q T P +S+ E +
Sbjct: 555 ELPASYTDVPAVDGTSPRMQPTASRVPLKSNEEDY 589
>SB_18868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 266 IKTFCFREQRSIRPAYVELPASLMDIGNVKGTSKPQR 156
+ FC R++ R AY EL S +GN K + +R
Sbjct: 234 VPAFCVRQRNVGRRAYRELVKSSSFLGNTKSKANDER 270
>SB_53460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -1
Query: 499 ILTFALKIHILSSYCFCTFDFITFSYQLIYSYYTFFLVFCFVYLE*YLSYTVTYL 335
+L + + + S+ F + +++ S + YSY + L C+ YL L +YL
Sbjct: 5 LLYLSRTVVVSYSFLFVCYSYLSRSLFVCYSYLSRSLFVCYSYLSRSLFVCYSYL 59
>SB_46351| Best HMM Match : EGF_CA (HMM E-Value=2.3e-14)
Length = 58
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +1
Query: 34 CPSRYH*Y-VPYCSSMNSPPECWLSVMTCPSNEDL--NGYSSTVRC 162
CPS Y+ + C + EC L V TCP++ D N S T RC
Sbjct: 1 CPSPYNALRISLCLDSDID-ECALGVATCPASADCVNNDGSYTCRC 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,215,207
Number of Sequences: 59808
Number of extensions: 341137
Number of successful extensions: 743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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