Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00456
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine d...    28   6.3  
Z29117-6|CAA82378.1|  176|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    27   8.3  

>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
            E01G6.1 protein.
          Length = 1391

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +1

Query: 10   LKPLFHPKCPSRYH*YVPYCSSMNSPPECWLSVMTCPS 123
            L   F   CP R    +PY S    PP C + +  CP+
Sbjct: 934  LSDRFQGYCPPRQ---IPYISRDGFPPTCHMQLSPCPT 968


>U37429-12|AAA79353.1|  274|Caenorhabditis elegans Alkylguanine dna
           alkyltransferaseprotein 2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 28  PKCPSRYH*YVPYCSSMNSPPECWLSVMTCPSNEDL 135
           P  P RY  + P   SM   P+     ++CPS  ++
Sbjct: 164 PTSPKRYRQFAPPPISMKQSPKICAKTVSCPSTSEV 199


>Z29117-6|CAA82378.1|  176|Caenorhabditis elegans Hypothetical
           protein C48B4.6 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 478 IHILSSYCFCTF-DFITFSYQLIYS-YYTFFLVFCFVYLE 365
           I I   Y    F DF  F   +++S YY  ++V CF+++E
Sbjct: 103 ILIFDDYHILVFRDFHKFGCSIMFSLYYIGYIVVCFLFIE 142


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 499 ILTFALKIHILSSYCFCTFDFITFSYQLIYSYYTFFLVFCFVYLE*YLSY 350
           +L+FA + +ILSS    T+    FS  +    +T F+V  F   + YL +
Sbjct: 107 LLSFAYRNYILSSAPPSTWKVFMFSVFIYIPSFTQFIVLMFTAADPYLIF 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,921,129
Number of Sequences: 27780
Number of extensions: 250643
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)