Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00456
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   3.2  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   5.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.8  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -1

Query: 496 LTFALKIHI-LSSYCFC-TFD-FITFSYQLIYSYYTFFLVFCFVYLE*YLSYT 347
           + F L+ H  ++ Y  C TF+ F T+++++ YS +   +++ F  +    +YT
Sbjct: 173 IVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLFGMIMMYWFPLVVIIYTYT 225


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 155 TVEEYPFRSSLEGH-VITLSQHSGGE 81
           T++  PFR   EGH V+ L +  G +
Sbjct: 103 TIDATPFRQWYEGHYVLPLGRKRGAK 128


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 399 LFFWCFVLFI*SNTCRIPLPIYSLW*K*VPVGIGMISV 286
           LF W F L +   T  I L   +L+   +P+ + +  +
Sbjct: 516 LFLWIFTLAVVVGTAGIILQAPTLYDDRIPIDVRLSEI 553


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 220 MWSYQRRSWTSAMSRAHLSRNA 155
           +W+  R+ + + M R  LSR A
Sbjct: 188 LWAIDRQCFQTIMMRTGLSRQA 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,514
Number of Sequences: 438
Number of extensions: 3249
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)