Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00456
(628 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23150.1 68417.m03341 protein kinase family protein contains ... 31 0.47
At4g23180.1 68417.m03344 receptor-like protein kinase 4, putativ... 29 3.3
At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A... 28 4.4
At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A... 28 4.4
At1g80060.1 68414.m09372 expressed protein 28 4.4
At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A... 27 7.7
>At4g23150.1 68417.m03341 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 659
Score = 31.5 bits (68), Expect = 0.47
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 22 FHPKCPSRYH*YVPYCSSMNSPPECWLSVMTCPSNEDLNGYSSTVRCGLDVPLTLPMSMS 201
F P C SRY Y Y + P L + PS D +G S+ V + VP+ + + +
Sbjct: 231 FWPSCNSRYELYDFYNETAIGTPPPPLPPLASPSLSDKSGNSNVVVVAVVVPIIVAVLIF 290
Query: 202 DAG 210
AG
Sbjct: 291 IAG 293
>At4g23180.1 68417.m03344 receptor-like protein kinase 4, putative
(RLK4) nearly identical to receptor-like protein kinase
4 [Arabidopsis thaliana] GI:13506745; contains Pfam
domain, PF00069: Protein kinase domain; identical to
cDNA receptor-like protein kinase 4 (RLK4) GI:13506744
Length = 669
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +1
Query: 19 LFHPKCPSRYH*YVPYCSSMNSPPECWLSVMT----CPSNEDLNGYSSTVRCGLDVPLTL 186
+ +P C SRY Y Y S PP S+ T P +G S + + VP+ +
Sbjct: 238 IINPSCTSRYEIYAFYTESAVPPPPPPPSISTPPVSAPPRSGKDGNSKVLVIAIVVPIIV 297
Query: 187 PMSMSDAG 210
+ + AG
Sbjct: 298 AVLLFIAG 305
>At4g15415.2 68417.m02357 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 10 LKPLFHPKCPSRYH*YVPYC 69
L PL PKC S YH + YC
Sbjct: 307 LIPLHRPKCASAYHQQLSYC 326
>At4g15415.1 68417.m02356 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B' (B'gamma) identical to B'
regulatory subunit of PP2A [Arabidopsis thaliana]
GI:2160694; similar to SWISS-PROT:Q28653
serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, delta isoform (PP2A, B subunit, B'
delta isoform, PP2A, B subunit, B56 delta isoform, PP2A,
B subunit, PR61 delta isoform, PP2A, B subunit, R5 delta
isoform, PP2A, B subunit, B'-gamma) [Oryctolagus
cuniculus]; contains Pfam domain, PF01603: Protein
phosphatase 2A regulatory B subunit (B56 family)
Length = 522
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 10 LKPLFHPKCPSRYH*YVPYC 69
L PL PKC S YH + YC
Sbjct: 307 LIPLHRPKCASAYHQQLSYC 326
>At1g80060.1 68414.m09372 expressed protein
Length = 243
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 242 QRSIRPAYVELPASLMDIGNVKGTSKPQ--RTVEEYPFRSSLEGHVITLSQHSGGEFML 72
Q I+ + V+L SL D+ K S + R VE+ S LEGH + H G F L
Sbjct: 50 QGRIKLSVVKLNGSLFDVEVAKDCSVAELKRAVEQVFTISPLEGHGMISWSHVWGHFCL 108
>At3g26020.1 68416.m03241 serine/threonine protein phosphatase 2A
(PP2A) regulatory subunit B', putative similar to
SWISS-PROT:Q28653 serine/threonine protein phosphatase
2A, 56 kDa regulatory subunit, delta isoform (PP2A, B
subunit, B' delta isoform, PP2A, B subunit, B56 delta
isoform, PP2A, B subunit, PR61 delta isoform, PP2A, B
subunit, R5 delta isoform, PP2A, B subunit, B'-gamma)
[Oryctolagus cuniculus]; contains Pfam domain, PF01603:
Protein phosphatase 2A regulatory B subunit (B56 family)
Length = 510
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 10 LKPLFHPKCPSRYH*YVPYCSSMNSPPECWLS 105
L PL PKC YH + YC + +C L+
Sbjct: 319 LIPLHKPKCLQMYHQQLSYCITQFVEKDCKLA 350
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,886,618
Number of Sequences: 28952
Number of extensions: 220784
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -