Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00455
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.24 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   9.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   9.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.0  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +3

Query: 516 IDEIDAIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLR 695
           +D +D + T   D     DR  +   ++ +++MD  D+T  +  I   ++ D +D  + R
Sbjct: 471 MDRVDTMDT--MDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKIDRMD-RMDR 527

Query: 696 PGRLDR 713
             R+DR
Sbjct: 528 TNRMDR 533


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 542 SSNRINFINENIAGLFSLARRKTSRTIRGPSPKYFCTNSDPTTRMNAAVV 393
           +S  +  +NE  A    L+ R     I+     Y+C +  P  R + AV+
Sbjct: 291 ASELVKILNELFARFDQLSERFEQLRIKILGDCYYCISGAPIERPDHAVL 340


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 31  HSWQHHWLKLL 63
           H+W H WL LL
Sbjct: 540 HTWIHPWLPLL 550


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 307 IGIEPPRGVLMYGPPGCGKTMLAKAVAHHTTAA 405
           +G+EPPR +L  G      T+L + + H T AA
Sbjct: 628 LGLEPPRVILSSGAK--SPTVL-EELTHGTLAA 657


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 307 IGIEPPRGVLMYGPPGCGKTMLAKAVAHHTTAA 405
           +G+EPPR +L  G      T+L + + H T AA
Sbjct: 628 LGLEPPRVILSSGAK--SPTVL-EELTHGTLAA 657


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 307 IGIEPPRGVLMYGPPGCGKTMLAKAVAHHTTAA 405
           +G+EPPR +L  G      T+L + + H T AA
Sbjct: 628 LGLEPPRVILSSGAK--SPTVL-EELTHGTLAA 657


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -3

Query: 234 PPISEY*TSGFSSACNIEIELSASGGKTSTRALEC 130
           PP+ ++ +S  S+ C+       +GG   +   +C
Sbjct: 278 PPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQC 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,056
Number of Sequences: 438
Number of extensions: 4438
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)