Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00453
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    54   2e-08
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    45   8e-06
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    29   0.76 
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   0.76 
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    28   1.3  
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.3  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    28   1.3  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    28   1.3  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   1.8  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   1.8  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   5.4  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    26   5.4  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   7.1  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   7.1  
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.4  

>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 27/104 (25%), Positives = 62/104 (59%), Gaps = 1/104 (0%)
 Frame = +3

Query: 291 WEELLRKSGVTQVKT-ILPLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKM 467
           +++L+ ++G+++V T ++ L ++K +++ +E KR+L  Q D  + D R++     +LGK 
Sbjct: 98  YKDLVNEAGLSKVVTRVIGLSKLKAKWNSYEQKRQLRDQFDIFLADDRVIPMLPRILGKT 157

Query: 468 FFKKHNMLIPVRLQANVTLRKPLKLVYACSSPFKYWNNINHSSW 599
           F++K  + +PV++      +   ++V A  +   Y+N+   SS+
Sbjct: 158 FYQKSKVPVPVKISKGTAEQLKREVVSAYGA--TYFNSAPCSSF 199



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 100 KKNTILDDES----PIFCEISCIKIQSVQTNI---KFVLPNSTAASTGEICLIVPDMKK 255
           KK  +L+DE     P++ +++ +K       +   K  + N    S+ E CLIV D ++
Sbjct: 38  KKTNLLEDEQDDIEPVWLQLATLKFIGNNRKLIPYKIAIKNPVIPSSSEACLIVKDPQR 96


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 45.2 bits (102), Expect = 8e-06
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
 Frame = +3

Query: 291 WEELLRKSGVTQVKT-ILPLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKM 467
           +++L+ + G+ +V T +L + ++K++Y     K +L   H+  +VD R+L +   L+GK+
Sbjct: 89  YQDLVEQQGLDEVITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRVLKYIPLLMGKV 148

Query: 468 FFKKHNMLIPVR-LQANVTLR 527
           F +K     P+  LQ   TLR
Sbjct: 149 FEQKKIKPFPISVLQKKETLR 169


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 531 PLKLVYACSSPFKYWNNINHSSW 599
           PL+L   C+  F+YW +IN ++W
Sbjct: 171 PLELT-TCAITFRYWTDINSAAW 192


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 291 WEELLRKSGVTQVKTILPLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHA 446
           WE  L+KS      + +  +Q + E D FE+K+   +  + ++V++R   HA
Sbjct: 445 WENPLQKSSDDDASSTVS-QQTETEMDSFEVKKDGTSGPNHLVVESRSHQHA 495


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 PLKLVYACSSPFKYWNNINHSSW 599
           PL+L   C+  F+YW +IN  +W
Sbjct: 178 PLELT-TCAITFRYWTDINSCAW 199


>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 52  LNSCLTAILQLSILHKKKNTILDDESPIFCEIS-CIKIQSVQTN 180
           + SCL    Q +ILH+      +  S +F E + C  I+ +++N
Sbjct: 1   MGSCLRFFKQGAILHENNTNFTERSSSVFFECNPCYSIEKLKSN 44


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 531 PLKLVYACSSPFKYWNNINHSSW 599
           PL+L   C+  FK+W  IN ++W
Sbjct: 171 PLELT-TCAITFKFWTEINSAAW 192


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 360 VEYDQFELKRKLLTQHDFIMVDTRILSHASHLL 458
           +EY  +EL+ KL+  HD + + T ++  ++  L
Sbjct: 749 LEYGNYELETKLIEMHDRVEMQTNVIEASASAL 781


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +3

Query: 342 PLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKMFFKK 479
           PL + + E  +F     LL + D + ++  + +H  H++GK  F+K
Sbjct: 189 PLPEEEAEGAEFVSFDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQK 234


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 573 WNNINHSSWSYWYAT 617
           W+N N+ +++YW+AT
Sbjct: 521 WSNTNYDTYAYWHAT 535


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 573  WNNINHSSWSYWYAT 617
            W+N N+ +++YW+ T
Sbjct: 1133 WSNTNYDAYAYWHVT 1147


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +3

Query: 432 ILSHASHLLGKMFFKKHNMLIPVRLQANVTLRKPLKLVYACSSPFKYWNNINHSSWSYW 608
           +L   S  L  + ++ H +L+ +  + N  LR  +  + AC   + YWN      +++W
Sbjct: 11  LLREDSISLETVLWETHYVLLNLHNEQN--LRLVVAQLIACGRIWDYWNEHRSEYFAFW 67


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 231 FNSS*YEKGRRFDHEPTIDHWEELLRKSGVTQ-VKTILPLRQVKVEYDQFELKRKLL 398
           F    Y+KG  +  EP    W +  +K  V Q  K +L +  V +  D F   R  L
Sbjct: 200 FEPEIYKKGSIWIREPIDQEWHQQDKKFSVKQKKKMVLSILHVSLIDDDFWTSRPFL 256


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 327 VKTILPLRQVKVEYDQFELKRKLLTQHD 410
           +K  L  ++++ E +Q EL+RKL  +H+
Sbjct: 67  LKNDLKRKELEFEREQIELQRKLAEEHE 94


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 299 FFPVINCWLMIKPSSFFISGTIKHISP 219
           F P  NC  +I+P S F + T   I P
Sbjct: 416 FLPDFNCLSLIEPISSFSASTYLQIDP 442


>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 286

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 564 FKYWNNINHSSWSYWYATGYLTR 632
           F +WNNI    +S  +   YLTR
Sbjct: 231 FGFWNNIIEKRFSKSFIDSYLTR 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,980
Number of Sequences: 5004
Number of extensions: 56998
Number of successful extensions: 148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)