Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00453
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)                  31   1.1  
SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_54379| Best HMM Match : AMP-binding (HMM E-Value=0.0023)            29   4.3  
SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)                   29   4.3  
SB_55822| Best HMM Match : BNR (HMM E-Value=5.8)                       28   5.7  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_322| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.9  

>SB_15422| Best HMM Match : TACC (HMM E-Value=6.4e-20)
          Length = 1362

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = +3

Query: 348 RQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKMFFKKHNMLIPVRLQANVTLR 527
           R  + +  + E K +LL +H    ++TR L HA   L KM+ KK+  L  VR+   +   
Sbjct: 379 RDYQEKLKKSEEKYQLLKKHAEEKIETR-LRHAQ--LAKMYTKKYRGLFHVRVSLELVCC 435

Query: 528 KPLKLVYACSSPFKYWNNINHSS 596
               +V +CS       N  H++
Sbjct: 436 YSYVMVSSCSERCTIRYNAMHNN 458


>SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1247

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +3

Query: 249 EKGRRFDHEPTIDHWEELLRKSGVTQVKTILPLRQVKVE 365
           ++ RR+  EP+  +W + L  +G+++V  +L  R++  E
Sbjct: 221 KESRRWLSEPSYGYWPQQLNFAGISKVSRVLYTRRILYE 259


>SB_54379| Best HMM Match : AMP-binding (HMM E-Value=0.0023)
          Length = 277

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 495 PVRLQANVTLRKPLKLVYACSSPFKYWNNINHSSWSYWYATGYLTRKCHFF 647
           P   Q  + ++ PL +    ++P    N I+H  W +    GY   + HF+
Sbjct: 110 PAGKQGEICIKGPLMMKGYLNNPEATANTIDHEGWLHTGDIGYYDDQEHFY 160


>SB_52711| Best HMM Match : rve (HMM E-Value=8.3e-05)
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
 Frame = +3

Query: 300 LLRKSGVTQVKTILPLRQVKVEYDQFELKRKLLTQ---HDFIMVDTRI-----LSHASHL 455
           +++   +T VK +L LR++  E    +L  K + +    +   V T++     + H  HL
Sbjct: 678 IIKDLPITDVK-LLQLREITKEDQDMQLLSKYIREVWPQNRQNVPTQVRPFWNVRHYLHL 736

Query: 456 LGKMFFKKHNMLIPVRLQANV 518
           L  +  K H ++IPV  ++N+
Sbjct: 737 LDGLVMKGHRLVIPVSWRSNI 757


>SB_55822| Best HMM Match : BNR (HMM E-Value=5.8)
          Length = 440

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +1

Query: 49  WLNSCLTAILQLSILHKKKNTILDDESPIF-CEISCIKIQSVQTNIKFVLPNSTA 210
           W N+C     ++ +L    N ++DD + I  C  S IK  SV+ N   V  N+ A
Sbjct: 145 WYNACFEVNFKVQLLADGGNIVVDDHNGIVNCIHSLIKEISVKVNGIPVYDNTQA 199


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 76  LQLSILHKKKNTILDDESPIFCEISCIKIQSVQTNI 183
           L+ SILHK++ TI D E     +IS I +  +  NI
Sbjct: 100 LRQSILHKRRVTIFDKEPLTMQKISTIDLAVIILNI 135


>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 327  VKTILPLRQVKVEYDQFELKRKLL-TQHDFIMVDTRILSHASHLLGKM 467
            VK ++PL   K     F+LK+KLL  +HD     T+   + +++LG +
Sbjct: 1047 VKDVVPLLSNKFRKVHFDLKKKLLGAKHDKPR-STKCFGYTNNILGPL 1093


>SB_322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 133 IFCEISCIKIQSVQTNIKFVLPNSTAASTGEICLIVPDMKKEEGL 267
           + C  S I+ QS +  IK   PN+   S  +  +IV D +K +GL
Sbjct: 1   MICRTSKIR-QSAEIMIKIRNPNNVLDSIKQFSIIVNDKEKMQGL 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,027,998
Number of Sequences: 59808
Number of extensions: 404881
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)