Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00453
         (649 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069795-1|AAL39940.1|  681|Drosophila melanogaster SD03546p pro...    78   1e-14
AE014134-1531|AAF52687.1|  681|Drosophila melanogaster CG13096-P...    78   1e-14
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    33   0.44 
AE013599-3057|AAF57433.1|  799|Drosophila melanogaster CG11136-P...    32   0.77 
BT001332-1|AAN71087.1|  886|Drosophila melanogaster AT18855p pro...    28   9.5  
AY118833-1|AAM50693.1|  489|Drosophila melanogaster GM01981p pro...    28   9.5  
AE014297-980|AAF54409.1|  874|Drosophila melanogaster CG8273-PA ...    28   9.5  

>AY069795-1|AAL39940.1|  681|Drosophila melanogaster SD03546p
           protein.
          Length = 681

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 34/86 (39%), Positives = 56/86 (65%)
 Frame = +3

Query: 249 EKGRRFDHEPTIDHWEELLRKSGVTQVKTILPLRQVKVEYDQFELKRKLLTQHDFIMVDT 428
           ++G +FD++PT  H+E++LR++GV Q  T++P  Q++ E   FE KRK L  +D+++ D 
Sbjct: 343 QRGAKFDYDPTKQHYEDMLREAGVKQRLTVVPFNQLRNEMGSFEAKRKFLNSYDYLLCDG 402

Query: 429 RILSHASHLLGKMFFKKHNMLIPVRL 506
           R+   A+  LGK   K  N+L  +RL
Sbjct: 403 RLSGQATAFLGKNTQKPRNVLHSLRL 428



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 91  LHKKKNTILDDESPIFCEISCIKIQSVQTN-IKFVLPNSTAASTGEICLIVPDMKK 255
           + KKKNT +  +     ++   KI S     +K  L +S      ++ LIVPD+++
Sbjct: 289 VEKKKNTSIFSDYRYVLQVCSYKIPSCPKRMVKLNLKHSLVGKDDDVALIVPDLQR 344


>AE014134-1531|AAF52687.1|  681|Drosophila melanogaster CG13096-PA
           protein.
          Length = 681

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 34/86 (39%), Positives = 56/86 (65%)
 Frame = +3

Query: 249 EKGRRFDHEPTIDHWEELLRKSGVTQVKTILPLRQVKVEYDQFELKRKLLTQHDFIMVDT 428
           ++G +FD++PT  H+E++LR++GV Q  T++P  Q++ E   FE KRK L  +D+++ D 
Sbjct: 343 QRGAKFDYDPTKQHYEDMLREAGVKQRLTVVPFNQLRNEMGSFEAKRKFLNSYDYLLCDG 402

Query: 429 RILSHASHLLGKMFFKKHNMLIPVRL 506
           R+   A+  LGK   K  N+L  +RL
Sbjct: 403 RLSGQATAFLGKNTQKPRNVLHSLRL 428



 Score = 29.9 bits (64), Expect = 3.1
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 91  LHKKKNTILDDESPIFCEISCIKIQSVQTN-IKFVLPNSTAASTGEICLIVPDMKK 255
           + KKKNT +  +     ++   KI S     +K  L +S      ++ LIVPD+++
Sbjct: 289 VEKKKNTSIFSDYRYVLQVCSYKIPSCPKRMVKLNLKHSLVGKDDDVALIVPDLQR 344


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +3

Query: 390 KLLTQHDFIMVDTRILSHASHLLGKMFFKKHNMLIPVRLQANVTLRKPLKLVYACSSPFK 569
           K +  HDF +VD         ++G  F KK+N  I +  + +  + +P  L +    P  
Sbjct: 111 KYVIPHDFHLVDKNFPIPCDGIIGIDFIKKYNCQIDLNQEEDWFIIRPNNLKFPIYIPIA 170

Query: 570 YWNNIN 587
           Y + IN
Sbjct: 171 YSSGIN 176


>AE013599-3057|AAF57433.1|  799|Drosophila melanogaster CG11136-PA
           protein.
          Length = 799

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +1

Query: 106 NTILDDESPIFCEISCIKIQSVQTNIKFVLPNSTAASTGE---ICLIVPDMKKEE 261
           N IL D SPI CE    K+ + Q  +  ++P+S++   GE    CL++   +K +
Sbjct: 569 NEILIDNSPIHCE---SKVVNGQNTVSVIVPDSSSLEIGESYRFCLVMIQEQKPD 620


>BT001332-1|AAN71087.1|  886|Drosophila melanogaster AT18855p
           protein.
          Length = 886

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 501 RLQANVTLRKPLKLVYACSSPFKYWNNINHSSWSYWYATGYLTRKCH 641
           RLQ N    + LK++Y        W N  H    +  +TG    K H
Sbjct: 649 RLQENPADSEALKMMYTAQRNMSSWANSKHLPGQFTGSTGAQVMKAH 695


>AY118833-1|AAM50693.1|  489|Drosophila melanogaster GM01981p
           protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 501 RLQANVTLRKPLKLVYACSSPFKYWNNINHSSWSYWYATGYLTRKCH 641
           RLQ N    + LK++Y        W N  H    +  +TG    K H
Sbjct: 252 RLQENPADSEALKMMYTAQRNMSSWANSKHLPGQFTGSTGAQVMKAH 298


>AE014297-980|AAF54409.1|  874|Drosophila melanogaster CG8273-PA
           protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +3

Query: 501 RLQANVTLRKPLKLVYACSSPFKYWNNINHSSWSYWYATGYLTRKCH 641
           RLQ N    + LK++Y        W N  H    +  +TG    K H
Sbjct: 637 RLQENPADSEALKMMYTAQRNMSSWANSKHLPGQFTGSTGAQVMKAH 683


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,448,409
Number of Sequences: 53049
Number of extensions: 561356
Number of successful extensions: 1279
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1279
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)