Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00453
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical ...    28   5.0  
U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF000266-6|AAC71167.1|  228|Caenorhabditis elegans Hypothetical
           protein W08F4.3 protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/33 (27%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 498 VRLQANVTLRKPLKLV-YACSSPFKYWNNINHS 593
           V + + ++L +PL ++ +     + YWNN++H+
Sbjct: 180 VHVTSGISLGEPLSVIQFYMKQAYNYWNNLSHT 212


>U97007-6|AAB52296.3|  468|Caenorhabditis elegans Hypothetical
           protein ZC196.4 protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 100 KKNTILDDESPIFCEISCI 156
           K+NTI DD+ P FCE S I
Sbjct: 147 KENTIEDDKKPDFCEYSNI 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,287,568
Number of Sequences: 27780
Number of extensions: 316097
Number of successful extensions: 780
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)