Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00453
         (649 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58660.1 68416.m06538 60S ribosomal protein-related contains ...    42   3e-04
At2g42650.1 68415.m05278 60S ribosomal protein-related similar t...    42   3e-04
At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative / phos...    31   0.50 
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.7  
At3g23960.1 68416.m03010 F-box family protein contains F-box dom...    27   8.1  

>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
           weak similarity to 60S ribosomal protein L10A (CSA-19)
           (NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
          Length = 446

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 33/66 (50%)
 Frame = +3

Query: 309 KSGVTQVKTILPLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKMFFKKHNM 488
           KS    +  ++ L ++K +Y  FE KRKL   +D    D RI+     ++GK FF     
Sbjct: 116 KSENIPITKVIKLSKLKSDYKAFEAKRKLCDSYDMFFTDRRIIPLLPRVIGKKFFTSKK- 174

Query: 489 LIPVRL 506
            IPV L
Sbjct: 175 -IPVAL 179


>At2g42650.1 68415.m05278 60S ribosomal protein-related similar to
           PBK1 protein (GI:3668141) [Homo sapiens]; weak
           similarity to 60S ribosomal protein L10a.
           (Swiss-Prot:Q9SW75) [Chlamydomonas reinhardtii]
          Length = 372

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 20/67 (29%), Positives = 34/67 (50%)
 Frame = +3

Query: 309 KSGVTQVKTILPLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKMFFKKHNM 488
           KS    +  ++ L ++K +Y  FE KRKL   +D    D R++     L+GK FF+    
Sbjct: 96  KSENIPITKVVKLSKLKSDYGSFESKRKLCDSYDMFFSDRRVIPMLPKLIGKKFFQSKKT 155

Query: 489 LIPVRLQ 509
            + + L+
Sbjct: 156 PVAIDLK 162


>At3g24840.1 68416.m03116 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; similar to SEC14
           CYTOSOLIC FACTOR (PHOSPHATIDYLINOSITOL/
           PHOSPHATIDYLCHOLINE TRANSFER PROTEIN) GB:P46250 from
           [Candida albicans] (Yeast (1996) 12(11), 1097-1105);
           contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam
           PF03765 : CRAL/TRIO, N-terminus
          Length = 579

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 252 KGRRFDHEPTIDHWEELLRKSGVTQVKTILPLRQVKVEYDQFE 380
           K RRFD E T+  WEE+L+      V TI+        YD++E
Sbjct: 109 KARRFDLEKTVQMWEEMLKWRKENGVDTIIQ----DFVYDEYE 147


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 275 LMIKPSSFFISGTIKHISPVDAAVLLGSTNLILV*TLCILMQDISQNIGDSSS 117
           + + P SF  S +  H   +D  V L S+       L + + D+S+N G+S S
Sbjct: 1   MKLSPLSFSTSSSFSHADGIDDGVELISSPFAGGAMLPVFLNDLSRNSGESGS 53


>At3g23960.1 68416.m03010 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 402

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 492 IPVRLQANVTLRKPLKLVYACSSPFKYWNNI 584
           IP+ L   + L+ P+K +  C S  K+W  +
Sbjct: 31  IPIDLLIEIFLKLPVKSIATCRSVSKFWTYV 61


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,121,136
Number of Sequences: 28952
Number of extensions: 279683
Number of successful extensions: 716
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)