Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00451
         (755 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CAE71 Cluster: hypothetical repeat containing p...    37   0.62 
UniRef50_A2RJJ0 Cluster: Putative uncharacterized protein ps352;...    33   5.8  
UniRef50_UPI00006CFA9A Cluster: hypothetical protein TTHERM_0044...    33   7.6  
UniRef50_UPI000069E723 Cluster: Vomeronasal type-1 receptor 4 (V...    33   7.6  

>UniRef50_UPI00006CAE71 Cluster: hypothetical repeat containing
            protein; n=1; Tetrahymena thermophila SB210|Rep:
            hypothetical repeat containing protein - Tetrahymena
            thermophila SB210
          Length = 2831

 Score = 36.7 bits (81), Expect = 0.62
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -2

Query: 505  FNAS-II*GIYTNIWPYSKSKINPMTVQIKLLFYFKQIHQHQYLYKYI-ECSTSLKSWLQ 332
            FN++ +I   ++ +W  +K+  N    Q+KLL        +QYLY  + +C   L  WL 
Sbjct: 1243 FNSNFMITDAFSEVWNITKTLKNTFNTQVKLLS-----SNNQYLYAILYDCIIQLDFWLN 1297

Query: 331  QLTTLIFTIHFIYLEHQFIF 272
            +L T+   I    + + +IF
Sbjct: 1298 ELNTVFNEIDQYIITNNYIF 1317


>UniRef50_A2RJJ0 Cluster: Putative uncharacterized protein ps352;
           n=1; Lactococcus lactis subsp. cremoris MG1363|Rep:
           Putative uncharacterized protein ps352 - Lactococcus
           lactis subsp. cremoris (strain MG1363)
          Length = 845

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 484 GIYTNIWPYSKSKINPMTVQIKLLFYFKQIHQHQYLYKYIECSTSLKSWL-----QQLTT 320
           GI T    Y+   I+P  V    + Y K IH    +Y+Y+   T   +       +  TT
Sbjct: 82  GIATYDADYNYDNISPEKVGSARVGYAKLIHYKPTVYEYVSIGTFYVTKCDPDRNENKTT 141

Query: 319 LIFTIHFIYLEHQFIFKL 266
           L  + HF++LE++++ +L
Sbjct: 142 LEASDHFVFLENEYVSEL 159


>UniRef50_UPI00006CFA9A Cluster: hypothetical protein TTHERM_00442990;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00442990 - Tetrahymena thermophila SB210
          Length = 2357

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -2

Query: 742  KELYFREFTWGIGNAEFQKL-CRIQILYYTDISLLHLYFQIGVLTTFFNREVPN*NDRCN 566
            + LY+RE    + N    +L C +QI+ + +     L++  G    F N +  N  D  N
Sbjct: 1722 RNLYWRENIKDVFNPIITRLICCMQIMAFQNYLSQTLHYNKGEYLNFQNLDKLNKQDPLN 1781

Query: 565  EVKVT*LHLLNYKI 524
              K+T  H LNY+I
Sbjct: 1782 NFKITNFH-LNYQI 1794


>UniRef50_UPI000069E723 Cluster: Vomeronasal type-1 receptor 4
           (V1r-like receptor 4) (hGPCR27).; n=1; Xenopus
           tropicalis|Rep: Vomeronasal type-1 receptor 4 (V1r-like
           receptor 4) (hGPCR27). - Xenopus tropicalis
          Length = 292

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -2

Query: 475 TNIWPYSKSKINPMTVQIKLLFYFKQIHQHQYLYKYIECSTSLKSWLQQLTTLIFTIHFI 296
           T IW Y K K+    V I  LF+   I     +Y Y+  S+  +   +  TT  +T+H +
Sbjct: 103 TKIWIYLKHKVTQNVVAIIFLFWIINI----AIYPYVFFSSHAR---RNQTTSPYTLHLV 155

Query: 295 YLEHQFI 275
           Y +  F+
Sbjct: 156 YCDSDFL 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,451,315
Number of Sequences: 1657284
Number of extensions: 11763149
Number of successful extensions: 25808
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25797
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)