Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00451
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   8.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   8.8  

>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 640 HLYFQIGVLTTFFNREVPN*NDRCNEVKVT*LHLLNYK 527
           ++   + ++   FN E    NDR +  K+T L +LNY+
Sbjct: 731 YIAVMVDIIMQVFNSEHLAVNDRVSACKLTELLMLNYR 768


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 73  ITLLNNKFIVVPNIYNVKICLNTLACFVQVNNLLKFKNYIKRFFS-FTLI 219
           + L+ N+F+ VP+  NV     T+ C  ++ +L     Y  +F + F L+
Sbjct: 235 VELITNRFLNVPDFRNV-----TIECLTEIASLTSQPQYNDKFVTMFNLV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,421
Number of Sequences: 5004
Number of extensions: 56975
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)