Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00451
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13075| Best HMM Match : 7tm_1 (HMM E-Value=4e-07)                   29   4.1  
SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)                 28   9.4  
SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        28   9.4  

>SB_13075| Best HMM Match : 7tm_1 (HMM E-Value=4e-07)
          Length = 311

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 285 CSRYIKWIVKINVVSCCNQLFKLV 356
           CS YI WIV IN++S C  ++ L+
Sbjct: 114 CS-YIIWIVLINILSVCRMIYPLL 136


>SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)
          Length = 459

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  LYITLLNNKFIVVPNIYNVKICLNTLA 147
           LYI L N +   VPN++ V + ++ LA
Sbjct: 79  LYIVLFNRRLRTVPNLFVVSLAISDLA 105



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 67  LYITLLNNKFIVVPNIYNVKICLNTLA 147
           LYI L N +   VPN++ V + ++ LA
Sbjct: 225 LYIVLFNRRLRTVPNLFVVSLAISDLA 251


>SB_24310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 425 LYCHWIDFAFTIWPYVCINTLYYASIKCVE 514
           +Y  WI+F+FT W   C+N + Y  +  ++
Sbjct: 70  MYNDWIEFSFTKWN--CLNLVQYERVMFID 97


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 425 LYCHWIDFAFTIWPYVCINTLYYASIKCVE 514
           +Y  WI+F+FT W   C+N + Y  +  ++
Sbjct: 335 MYDDWIEFSFTKWN--CLNLVQYERVMFID 362


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,560,917
Number of Sequences: 59808
Number of extensions: 348885
Number of successful extensions: 674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)