Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00451
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical ...    30   1.5  
Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   4.7  
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi...    29   4.7  
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota...    29   4.7  

>AC024804-5|AAF60747.2|  143|Caenorhabditis elegans Hypothetical
           protein Y51H7BR.4 protein.
          Length = 143

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = +1

Query: 67  LYITLLNNKFIVVPNIYNVKICLNTLACFV 156
           +Y    +N+F+++P+I+ + +C N+LAC+V
Sbjct: 68  MYALAEHNRFLLIPHIFLLILC-NSLACYV 96


>Z68215-8|CAA92454.1|  318|Caenorhabditis elegans Hypothetical
           protein C53B4.6 protein.
          Length = 318

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
 Frame = +1

Query: 70  YITLLNNKFIVVPNIYNVKICLNTLACFVQV---NNL-LKFKNYIKRFFSF---TLITN 225
           Y  + ++KF  VPN   +K     +A F  V   NNL LKF  Y   F  F   TL+TN
Sbjct: 45  YGLIFHSKFFTVPNRIPIKSYAKIVAIFFTVNMTNNLALKFAIYFPLFIIFKSGTLLTN 103


>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
           protein F08B12.3c protein.
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 419 LYLYCHWIDFAFTIW----PYVCINTLY 490
           LY Y  W+DF F IW     + CI+ +Y
Sbjct: 90  LYKYLLWVDFDFKIWFLQTMFACISMVY 117


>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
           protein F08B12.3b protein.
          Length = 1107

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 419 LYLYCHWIDFAFTIW----PYVCINTLY 490
           LY Y  W+DF F IW     + CI+ +Y
Sbjct: 111 LYKYLLWVDFDFKIWFLQTMFACISMVY 138


>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
           protein F08B12.3a protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 419 LYLYCHWIDFAFTIW----PYVCINTLY 490
           LY Y  W+DF F IW     + CI+ +Y
Sbjct: 111 LYKYLLWVDFDFKIWFLQTMFACISMVY 138


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 437 WIDFAFTIWPYVCINTLYYASIKCVEIILNFV 532
           W    F +  YVC+  L +  I C  ++++F+
Sbjct: 461 WSAAQFAVTSYVCVRVLKFLYIMCKSVLVHFI 492


>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
           channel protein.
          Length = 1107

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 419 LYLYCHWIDFAFTIW----PYVCINTLY 490
           LY Y  W+DF F IW     + CI+ +Y
Sbjct: 111 LYKYLLWVDFDFKIWFLQTMFACISMVY 138


>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
           potassium channel Slo-2 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = +2

Query: 419 LYLYCHWIDFAFTIW----PYVCINTLY 490
           LY Y  W+DF F IW     + CI+ +Y
Sbjct: 111 LYKYLLWVDFDFKIWFLQTMFACISMVY 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,463,001
Number of Sequences: 27780
Number of extensions: 308579
Number of successful extensions: 641
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)