Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00450
         (810 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.            57   7e-10
AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small...    44   6e-06

>EF127647-1|ABL74413.1|  213|Anopheles gambiae Rab5 protein.
          Length = 213

 Score = 56.8 bits (131), Expect = 7e-10
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +3

Query: 522 GKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLYIK 698
           GKS+L ++FV G F E  + TI   F  + + +D++    EI DTAG E++ S+  +Y +
Sbjct: 36  GKSSLVLRFVKGQFHEYQESTIGAAFLTQTLCIDDTTVKFEIWDTAGQERYHSLAPMYYR 95

Query: 699 NGQGFVVVYSINKPPNVSRHQT-MKEL 776
             Q  +VVY I    + +R +T +KEL
Sbjct: 96  GAQAAIVVYDIQNSDSFARAKTWVKEL 122


>AJ438610-3|CAD27475.1|  190|Anopheles gambiae putative RHO small
           GTPase protein.
          Length = 190

 Score = 44.0 bits (99), Expect = 6e-06
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +3

Query: 513 GFRGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDNSPCVLEILDTAGTEQFASMRDLY 692
           G  GK+ + + + +  F  +Y PT  D Y   + VD     L + DTAG E +  +R L 
Sbjct: 15  GTVGKTCMLISYTTDSFPGEYVPTSFDNYSAPMVVDGVQVSLGLWDTAGQEDYDRLRPLS 74

Query: 693 IKNGQGFVVVYSINKP 740
                 F++ YS+  P
Sbjct: 75  YPQTDVFLICYSVASP 90


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 793,981
Number of Sequences: 2352
Number of extensions: 16141
Number of successful extensions: 33
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)