Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00449
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 30 0.40
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 29 0.71
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 29 0.71
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 1.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 28 1.2
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 28 1.2
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 28 1.6
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 27 2.9
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 27 2.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 3.8
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc... 27 3.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 26 5.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 26 5.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 5.0
SPAC5H10.08c |pan6||pantoate-beta-alanine ligase |Schizosaccharo... 26 6.6
SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr 1||... 26 6.6
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 29.9 bits (64), Expect = 0.40
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +3
Query: 276 RDILLKFTENLPM-NNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVK----LYNATNT 440
++ + K ++NL NNR++N + KN+ Q+E T+ + +++N K LY + T
Sbjct: 125 KESVSKLSKNLESRNNRDENSAKREKNNSHQVEADTNNATEMVSSNAKKSVYPLYYDSAT 184
Query: 441 IADESRKTNDLLETMLRIL 497
+ + K+ L + LRIL
Sbjct: 185 V-KKGLKSGTLFKGTLRIL 202
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 29.1 bits (62), Expect = 0.71
Identities = 27/91 (29%), Positives = 46/91 (50%)
Frame = +3
Query: 228 G*EDYLRRRNKMLMKIRDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTN 407
G +DY R NK+ + D+ LKF E L +N N + T+ + SQ+ IT KL+ L
Sbjct: 86 GIQDYASRINKLEQTMSDMNLKF-EAL-QKEQNSN-TKTLADCTSQMTIITKKLDAELKK 142
Query: 408 NNVKLYNATNTIADESRKTNDLLETMLRILS 500
+ T T+ +++ ++ T R+L+
Sbjct: 143 RYMTT-KQTRTVQNQTMPRSN-TTTKKRVLA 171
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 29.1 bits (62), Expect = 0.71
Identities = 13/72 (18%), Positives = 36/72 (50%)
Frame = +2
Query: 500 LSTKIITTNPTIVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEV 679
++ K +++ V + Y N+V+ +NE +++ + + + V+ +L+ I L + +
Sbjct: 1210 ITEKDVSSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLAN 1269
Query: 680 LAMTEEPRHERL 715
+ +E +L
Sbjct: 1270 FRLNKEQLESQL 1281
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 557 ENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAM 688
ENL+ +N+ +++ + ++ DL+N+ AQ S+IE L +
Sbjct: 1330 ENLIEELNQEIGHLKSELETVKSKSEDLENERAQNQSKIEQLEL 1373
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +2
Query: 557 ENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHE----RLSKA 724
E + S E+ QNI+ + K+++ LND +DI + E+LA +E + + ++
Sbjct: 68 ETIESDTKEV-QNIKPKSKKKKKKLNDSSDDIEGKYFE-ELLAEEDEEKDKDSAGLINDE 125
Query: 725 QDSSPATNS 751
+D SPA S
Sbjct: 126 EDKSPAKQS 134
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +3
Query: 306 LPMNNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLETM 485
L N RND +S + + + S L NN+ + + D S +T ++++T+
Sbjct: 414 LNSNQRNDELSASGSQEPHPKDGTNSTSSLPLDTNNLSNSEPPSHVLDASSETIEVIQTI 473
Query: 486 LRILSYRPK 512
++ + P+
Sbjct: 474 KKLQNQVPE 482
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 336 SVTVKNDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLETMLRIL 497
SV V+ DLS ++S T TN+ + N +++DE+ + + + +L +L
Sbjct: 683 SVPVQRDLSSPFYLSSNQHTTTTNSEPENLNVETSMSDEAFNADKVTKGLLMLL 736
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 276 RDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTN 407
RD+ L F + +NN +N + N L I + TS LE+ TN
Sbjct: 459 RDLNLNFENSEFLNNEEENDEDELSNVLVSIPSRTSVLERLDTN 502
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +2
Query: 455 QKN*RLVRDNVENFILSTKIITTNPTIVKGNATYENLVSYVNEIKQN---IEDRWKERQN 625
+K R +E LS + + TN +++ E L ++E K I ++ + +
Sbjct: 117 EKQHRSASSKLELAKLSAQQLQTNVNVLRSQNNPEILQDMISETKDCRSLIAEQLLQSAS 176
Query: 626 VLNDLQND---IAQLHSRI 673
+LND QND IA+ HS +
Sbjct: 177 LLNDFQNDSDRIAKNHSSL 195
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 273 IRDILLKFTENLPMNNRNDNISVTV-KNDLSQIENITSKLEKTLTNNNV 416
+RDI K ++ +N N+NI + K D++ +E + S + K L + +
Sbjct: 191 LRDISQKHAAHVVINVTNNNIKIEAKKRDVAIVEELISGIFKHLKSKTI 239
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 10 NRISTISAEDFMGTNLKKLSIGGNPLPCEIIVKFKQNDVPFELTSLRIDEHSAENFEGIA 189
N+I I D + NL+KL +G N I KF+ + +L+ L I + FE +A
Sbjct: 158 NKIRVIENLDTL-VNLEKLWVGKNK-----ITKFENFEKLQKLSLLSIQSNRITQFENLA 211
Query: 190 C 192
C
Sbjct: 212 C 212
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 288 LKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRK 461
L +EN ++N+ +++ V N+LS + +LE+ +TN + T DE RK
Sbjct: 1221 LASSENKDLSNKVSSLTKQV-NELSPKASKVPELERKITNLMHEYSQLGKTFEDEKRK 1277
>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 290
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 411 NVKLYNATNTIADESRKTNDLLETM 485
N K +N ++ I++E K+NDLLE +
Sbjct: 62 NDKTFNESDVISNERFKSNDLLELL 86
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 229 PWHLLPPYVY*HYMRYL--RNFQHCVHLFSTKSVQKE 125
P+ + P Y + L RN++H H F K++++E
Sbjct: 982 PYRIFPKATYQCIQKPLGFRNYRHIAHYFKEKNIEEE 1018
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -1
Query: 229 PWHLLPPYVY*HYMRYL--RNFQHCVHLFSTKSVQKE 125
P+ + P Y + L RN++H H F K++++E
Sbjct: 982 PYRIFPKATYQCIQKPLGFRNYRHIAHYFKEKNIEEE 1018
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = +2
Query: 581 EIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHERLSK 721
+I+Q+ ++ W + N N+L+ +LH +++ L + + E LSK
Sbjct: 538 DIRQSFKENWVVKSNFNNNLR----KLHEKLQSLFASYDKLQEDLSK 580
>SPAC5H10.08c |pan6||pantoate-beta-alanine ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 6.6
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +3
Query: 243 LRRRNKMLMKIRDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTNNN--- 413
+R N + I+ +++ + L +++RN ++ + + I KL + L+N N
Sbjct: 163 VRDLNFFIEIIQVPIVRADDGLALSSRNGYLTSEERKIAPNLYKILKKLAQELSNGNGDL 222
Query: 414 VKLYNATNTIADESRKTNDLLE 479
KL TNT R D LE
Sbjct: 223 EKLIAETNTELSRCRFIPDQLE 244
>SPAC31A2.13c |sft1||SNARE Sft1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 91
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/62 (20%), Positives = 30/62 (48%)
Frame = +3
Query: 312 MNNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLETMLR 491
MN++N+ T+ +S ++N+T + + N+ ++ AT + + S E R
Sbjct: 1 MNDQNERRLETLSGQVSSLKNVTYDI-YSRANDYTRIDRATESFSGLSNSVKKSTENFFR 59
Query: 492 IL 497
++
Sbjct: 60 VV 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,331
Number of Sequences: 5004
Number of extensions: 56300
Number of successful extensions: 215
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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