Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00449
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 32 0.42
03_05_0109 - 20903013-20903062,20903406-20903538,20903631-209037... 30 1.7
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 30 2.3
06_01_0975 - 7566280-7566461,7567004-7567132,7567203-7567236,756... 29 3.0
06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300 29 5.2
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 28 6.9
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 28 9.1
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 9.1
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 28 9.1
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 548 ATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLA---MTEEPRHERLS 718
A YE VS V+E+++ I+ ER+ L L+ I L S ++ ++ E ERL
Sbjct: 758 AQYEKSVSTVSELEKTIKTYGSEREGRLKALERKIKSLKSELQSMSKQLKAHESERERLI 817
Query: 719 KAQDS 733
+D+
Sbjct: 818 MEKDA 822
>03_05_0109 -
20903013-20903062,20903406-20903538,20903631-20903726,
20904011-20904168,20904278-20904392,20904486-20904539,
20904818-20904925,20905406-20905495,20905907-20906086,
20906204-20906516,20906619-20906794
Length = 490
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 575 VNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHERLSK 721
V+E+++ ++ + KER ++ D +A L S +E EPR ++ +
Sbjct: 346 VHEMEERVKAKEKERDQIVADENQKLAALRSEVEWKLKCLEPRERKVEE 394
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 29.9 bits (64), Expect = 2.3
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = +3
Query: 216 NRCHG*EDYLRRRNKMLMKIRDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEK 395
NR HG +DYL+ K ++ LK M+ N ++ VKN++ + E + ++E+
Sbjct: 457 NRHHG-KDYLKYEMKSYNEMVVTQLK-----QMSEDNQQLNY-VKNEMVKTERHSKEVEE 509
Query: 396 TLTNNNVKLYNATNTIADESRKTNDLLETMLRILSYRPK 512
L KL A RKT ++L + + + K
Sbjct: 510 ALGVETQKLQGAIEDNIILKRKTKEMLSECVEQMEFNAK 548
>06_01_0975 -
7566280-7566461,7567004-7567132,7567203-7567236,
7567347-7567579,7568526-7568587,7568704-7568761,
7568856-7568922,7569016-7569063
Length = 270
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 345 VKNDLSQIENITSKLEKTLTNNNVKLYNATNTIADESRKTNDLLETMLRI 494
+K+ ++++++ +L LT +L A + DE+RKT +L +L++
Sbjct: 40 MKDWVAELQSENERLVAKLTQKEQQLVEAQTLLLDETRKTKELNSEILKL 89
>06_03_0051 - 16023915-16023944,16024025-16024680,16024808-16025300
Length = 392
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +3
Query: 234 EDYLRRRNKMLMKIRDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTNNN 413
+DYL R NK+L +R + + N P + + + + V + S + + +S L+ +++
Sbjct: 129 DDYLFRFNKILSNLRSVDSSYDANYPQSEISRHF-LNVDSKSSALVSSSSSLDVDASSSK 187
Query: 414 ---VKLYNATNTIADESRKTNDLLETMLRI 494
+ ++NAT+ E + DL RI
Sbjct: 188 SSFLAIFNATSDDQLEQIEEEDLALVANRI 217
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/59 (23%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +2
Query: 560 NLVSYVNEIKQNIEDR--WKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHERLSKAQD 730
N++ + I++ +++R WK + +L N ++ L + +E L++ E+ ER+S ++
Sbjct: 214 NVLEGIGLIEKTLKNRIRWKGLDDSGVELDNGLSALQAEVENLSLKEQALDERISDMRE 272
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 578 NEIKQNIEDRWKERQNVLNDLQNDIAQLHSRI 673
+++++N+ R KE+ +L ++ND A ++S I
Sbjct: 345 SDVQENVTRRKKEKDEILAVIENDTAAVNSNI 376
>05_04_0149 - 18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 324 NDNISVTVKNDLSQIENITSK---LEKTLTNNNVKLYNATNTIADESRK 461
ND+IS V + SQ+EN+T K LE L +L A + +E+ K
Sbjct: 930 NDSISQEVLSLRSQVENLTRKSQLLEADLERTTKQLKEAISIAGEETAK 978
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +2
Query: 635 DLQND-IAQLHSRIEVLAMTEEPRHERLSKAQDSSP 739
DLQ D +AQL +++ +T++ +++K Q +SP
Sbjct: 273 DLQVDQVAQLREEVDMKTLTQDKYKRKIAKMQKTSP 308
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,354,538
Number of Sequences: 37544
Number of extensions: 286916
Number of successful extensions: 732
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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