Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00449
         (751 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    28   0.35 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   5.8  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +2

Query: 575 VNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHERLSKAQ 727
           ++E+K++ + R ++ Q  LN+L +  A+   R++ +      R + + K Q
Sbjct: 707 MDELKRHTQQRREQLQRELNELNSAYAKEDERLQEMTRKLHQRQQHMKKLQ 757


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 590 QNIEDRWKERQNVLNDLQNDIAQLHSRIEVLA 685
           Q  +DR K  Q  L D + D+        VLA
Sbjct: 261 QKAQDRLKNAQKALKDAKKDVVTAKDEKSVLA 292


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,908
Number of Sequences: 2352
Number of extensions: 12056
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)