Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00449
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g06140.1 68415.m00675 hypothetical protein 32 0.47
At5g23750.2 68418.m02787 remorin family protein contains Pfam do... 31 0.82
At5g23750.1 68418.m02786 remorin family protein contains Pfam do... 31 0.82
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR... 31 0.82
At3g48940.1 68416.m05346 remorin family protein contains Pfam do... 31 0.82
At2g18260.1 68415.m02129 syntaxin-related protein, putative (SYP... 31 0.82
At1g34420.1 68414.m04275 leucine-rich repeat family protein / pr... 30 1.4
At4g16820.1 68417.m02539 lipase class 3 family protein similar t... 30 1.9
At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2) (T... 29 3.3
At4g18260.1 68417.m02711 cytochrome B561-related related to cyto... 28 5.8
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila... 28 7.6
>At2g06140.1 68415.m00675 hypothetical protein
Length = 633
Score = 31.9 bits (69), Expect = 0.47
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 243 LRRRNKMLMKIRDILLKFTENLP-MNNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVK 419
L + L++I + LL E++ N R N+ +TV S ++ +LEK LTN+N
Sbjct: 95 LENMGEALVEINNTLLNHQEDIQDQNTRMVNVGLTVDTVESLLDWKIEELEKKLTNSNES 154
Query: 420 L 422
L
Sbjct: 155 L 155
>At5g23750.2 68418.m02787 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 201
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 581 EIKQNIEDRWKERQNVLNDLQNDIAQLHSRI-EVLAMTEEPRHERLSKAQD 730
E+K+ E K++ + ++N IAQ+H E AM E R E + KA++
Sbjct: 132 ELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEE 182
>At5g23750.1 68418.m02786 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 202
Score = 31.1 bits (67), Expect = 0.82
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 581 EIKQNIEDRWKERQNVLNDLQNDIAQLHSRI-EVLAMTEEPRHERLSKAQD 730
E+K+ E K++ + ++N IAQ+H E AM E R E + KA++
Sbjct: 133 ELKKMEEQLEKKKAEYVEQMKNKIAQIHKEAEEKRAMIEAKRGEEILKAEE 183
>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 31.1 bits (67), Expect = 0.82
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 276 RDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVKLYNATNTIADES 455
+D+ F +L R I + ND+ + + I+S+L + + + + + + T A S
Sbjct: 25 KDVRRTFLSHLLKEFRRKGIRTFIDNDIKRSQMISSELVRAIRESRIAVVVLSRTYASSS 84
Query: 456 RKTNDLLE 479
N+L+E
Sbjct: 85 WCLNELVE 92
>At3g48940.1 68416.m05346 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region and Pfam
domain, PF03763: Remorin, C-terminal region
Length = 175
Score = 31.1 bits (67), Expect = 0.82
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 581 EIKQNIEDRWKERQNVLNDLQNDIAQLHSRI-EVLAMTEEPRHERLSKAQD 730
E+K+ E K++ + ++N IAQ+H E AMTE R E + KA++
Sbjct: 106 ELKKIEEQLNKKKAHYTEQMKNKIAQIHKEAEEKRAMTEAKRGEDVLKAEE 156
>At2g18260.1 68415.m02129 syntaxin-related protein, putative
(SYP112) similar to SP|Q42374 Syntaxin-related protein
KNOLLE (Syntaxin 111) (AtSYP111) {Arabidopsis thaliana}
Length = 285
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/61 (24%), Positives = 34/61 (55%)
Frame = +2
Query: 533 IVKGNATYENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHER 712
++ G+ + +LV E+K ++ + KER +ND++ + +LH +A+ E + +R
Sbjct: 189 MISGSGSCSDLVKTF-EVKPEMDLKTKERHEAVNDIKRSLNRLHQVFLDMAVLVETQGDR 247
Query: 713 L 715
+
Sbjct: 248 I 248
>At1g34420.1 68414.m04275 leucine-rich repeat family protein /
protein kinase family protein contains leucine rich
repeat (LRR) domains, Pfam:PF00560; contains protein
kinase domain, Pfam:PF00069
Length = 966
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +3
Query: 249 RRNKMLMKIRDILLKFTENLPMNNRNDNISVTVKNDLSQIENITSKLEKTLTNNNVKLYN 428
++NK+ +I D + + L +N +++S ++ LSQ+ K L+N N++ N
Sbjct: 424 QQNKLTGEIPDTIAFLSNLLILNISCNSLSGSIPPSLSQL--------KRLSNMNLQGNN 475
Query: 429 ATNTIADESRKTNDLLETML 488
TI D + DL+E L
Sbjct: 476 LNGTIPDNIQNLEDLIELQL 495
>At4g16820.1 68417.m02539 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 517
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 327 DNISVTVKNDLSQIENITSKLEKTLTNNN 413
+N+ T N + IEN+TS+ EKT N +
Sbjct: 50 ENVLRTSSNSIDHIENVTSRQEKTTKNTS 78
>At5g62410.1 68418.m07832 SMC2-like condensin, putative (SMC2)
(TITAN3) very strong similarity to SMC2-like condensin
(TITAN3) [Arabidopsis thaliana] GI:14279543; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1175
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 554 YENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLHSRIEVLAMTEEPRHE 709
Y+N V++++ +I+D K R+ L DL+ +I + ++++ A + HE
Sbjct: 764 YKNCFDAVSKLENSIKDHDKNREGRLKDLEKNIKTIKAQMQA-ASKDLKSHE 814
>At4g18260.1 68417.m02711 cytochrome B561-related related to
cytochrome b-561 (GI:20345443) [Mus musculus]; multidrug
resistance protein, Homo sapiens, PIR2:S71841
Length = 545
Score = 28.3 bits (60), Expect = 5.8
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = -1
Query: 496 KILNIVSNKSLVFLLSSAIVFVALYNFTL---LLVKVFSNLLVMFSI*LKSFLTVTEILS 326
K+ I+ S+ FL+ I+F+ + N + VKVF L V+F I T+ ILS
Sbjct: 62 KLHGILLWVSMGFLMPVGILFIRMANKAHENGIKVKVFFYLHVIFQILAVVLATIGAILS 121
Query: 325 FRLFMGKFSVN 293
R F N
Sbjct: 122 LRTLENSFDNN 132
>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
to receptor protein kinase [Ipomoea trifida]
gi|836954|gb|AAC23542; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 815
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +2
Query: 557 ENLVSYVNEIKQNIEDRWKERQNVLNDLQNDIAQLH--SRIEVL 682
++L ++ + +++ E WK+R N++N + I LH SR+ ++
Sbjct: 579 KSLDFFIFDERRSTELDWKKRMNIINGVARGILYLHQDSRLRII 622
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,060,335
Number of Sequences: 28952
Number of extensions: 264032
Number of successful extensions: 840
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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