Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00448
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   4.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.1  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 46  TKMESDPATHSDSHDGAEVSPQADNQ 123
           +KME DPAT  D+        QADNQ
Sbjct: 83  SKMEIDPATQKDA---GYYECQADNQ 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 62  TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 169
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 62  TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 169
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 234 QRCFGRRPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 371
           ++C+   PS  P      PV+E     A+    + E +S  + E S
Sbjct: 836 EQCWSGEPSKRPLLGAIVPVLESIQQKAKRSKSLQEVSSDKLQESS 881


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
            isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 234  QRCFGRRPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 371
            ++C+   PS  P      PV+E     A+    + E +S  + E S
Sbjct: 874  EQCWSGEPSKRPLLGAIVPVLESIQQKAKRSKSLQEVSSDKLQESS 919


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 545 PTDSGVGEVEGAPSVQDDESSTM 613
           P DSGV +VE + S   +E + +
Sbjct: 245 PADSGVSDVESSTSSGGNEDANL 267


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -1

Query: 576 PSTSPTPLSVGRMAELID*SGDSQHH 499
           P T PTP S   +   I    D  HH
Sbjct: 294 PETQPTPPSATLVGTTITHLRDPDHH 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,279
Number of Sequences: 438
Number of extensions: 2947
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)