Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00448
(738 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 34 0.11
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 33 0.20
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 33 0.20
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 33 0.26
At5g19900.1 68418.m02368 PRLI-interacting factor, putative stron... 32 0.35
At3g50550.1 68416.m05528 expressed protein isoform contains a n... 31 1.1
At5g23950.1 68418.m02812 C2 domain-containing protein similar to... 30 1.4
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain... 30 1.4
At5g26730.1 68418.m03166 expressed protein ; expression support... 30 1.8
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 30 1.8
At5g66540.1 68418.m08389 expressed protein ; supported by full-L... 29 2.4
At5g04460.1 68418.m00443 expressed protein 29 3.2
At4g26380.1 68417.m03795 DC1 domain-containing protein contains ... 29 3.2
At1g30650.1 68414.m03748 WRKY family transcription factor contai... 29 3.2
At4g32330.2 68417.m04600 expressed protein 29 4.3
At4g32330.1 68417.m04599 expressed protein 29 4.3
At3g51070.1 68416.m05592 dehydration-responsive protein-related ... 29 4.3
At1g80000.2 68414.m09359 expressed protein identical to unknown ... 29 4.3
At1g80000.1 68414.m09358 expressed protein identical to unknown ... 29 4.3
At5g22650.2 68418.m02647 expressed protein non-consensus AT dono... 28 5.6
At5g22650.1 68418.m02646 expressed protein non-consensus AT dono... 28 5.6
At3g13780.1 68416.m01739 expressed protein 28 5.6
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ... 28 7.4
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ... 28 7.4
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 28 7.4
At1g48380.1 68414.m05404 root hair initiation protein root hairl... 28 7.4
At1g12650.1 68414.m01469 expressed protein similar to KED (GI:80... 28 7.4
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain... 27 9.8
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain... 27 9.8
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR... 27 9.8
At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PS... 27 9.8
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 27 9.8
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 27 9.8
At2g22795.1 68415.m02704 expressed protein 27 9.8
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p... 27 9.8
>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1377
Score = 33.9 bits (74), Expect = 0.11
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Frame = +3
Query: 273 AQEEHPVVEQG--NADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDN 446
A+ EH V +G + DA+DE D + +G + IGD C EE ++ D
Sbjct: 994 AKTEHSVEAEGENDEDADDEDGDDASEAGEDASGTESIGDECSQDDNGVEEEGEHDEIDG 1053
Query: 447 QLDSMIKEPESEEAEGLGDAESLLISLSVLPFYQQIVV*VK-LKEHQA 587
+ +S EAEG+ L+ + P +++++ VK L +H A
Sbjct: 1054 KAES------EGEAEGM--ESHLIEDKGLFPSSERVLLSVKPLSKHIA 1093
>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1000
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 294 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQD 443
V Q D +DEMD+D + A E G+ + ++ P D+D
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGPVTDKD 414
>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 997
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 294 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQD 443
V Q D +DEMD+D + A E G+ + ++ P D+D
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGPVTDKD 414
>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
(COX6b) nearly identical to subunit 6b of cytochrome c
oxidase [Arabidopsis thaliana] GI:6518353
Length = 191
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 273 AQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQL 452
A+EE PV E+ + E++ + ++ +E A DN TPA EEN+ +N +
Sbjct: 52 AKEESPV-EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDENASEEVA 110
Query: 453 DSMIKEPESEEA 488
+ E + E A
Sbjct: 111 EETPDEIKLETA 122
>At5g19900.1 68418.m02368 PRLI-interacting factor, putative strong
similarity to PRLI-interacting factor A [Arabidopsis
thaliana] GI:11139262
Length = 494
Score = 32.3 bits (70), Expect = 0.35
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +3
Query: 249 RRPSIAPPAQEEHPVVE-QGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENS 425
RR +A A EE VVE + +D +D D SG E D C+ A + +
Sbjct: 352 RRDMVAQDANEE--VVENESESDGDDTGGSDARTSGETKENHVAAEDVCMQDVAARDNEA 409
Query: 426 PQNDQDNQLDSMIKEPESEEAEGLGDA 506
+ +N S+ + ++++ G+G +
Sbjct: 410 VVKENNNNSKSVDEVKANKQSVGVGSS 436
>At3g50550.1 68416.m05528 expressed protein isoform contains a
non-consensus AT donor site at intron 1
Length = 95
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +3
Query: 297 EQGNADAEDEMDIDETASGAMNEESA--YIGDNCLSTPADTEENSPQNDQDNQLDSMIKE 470
E+ + D +D+ D D +S +EE GD+ S+ D +++ +D D++ D +E
Sbjct: 15 EEYDEDDDDDDDTDGESSDEDDEEEDRNLSGDDSESSEDDYTDSNSDSDDDDEEDDDDEE 74
Query: 471 PESEE 485
E EE
Sbjct: 75 EEEEE 79
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +3
Query: 318 EDEMDIDETASGAMNEESA-----YIGDNCLSTPAD-TEENSPQNDQDNQLDSMIKEPES 479
ED+ D D+T + +E+ GD+ S+ D T+ NS +D D + D E E
Sbjct: 19 EDDDDDDDTDGESSDEDDEEEDRNLSGDDSESSEDDYTDSNSDSDDDDEEDDD--DEEEE 76
Query: 480 EEAEGLGDAESLLI 521
EE + L D + L+
Sbjct: 77 EEEDSLVDKVTRLL 90
>At5g23950.1 68418.m02812 C2 domain-containing protein similar to
cold-regulated gene SRC2 [Glycine max] GI:2055230;
contains Pfam profile PF00168: C2 domain
Length = 219
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 557 GVGEVEGAPSVQDDESSTMDEDIAEGGVASSDDVND 664
GV EG +V+ DE D+D A A DD +D
Sbjct: 176 GVALAEGLEAVEGDEDDDDDDDAAAAAAADDDDDDD 211
>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
protein low similarity to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1378
Score = 30.3 bits (65), Expect = 1.4
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = +3
Query: 297 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPE 476
E N D D++D E AS A ES GD C EEN ++ D + +S
Sbjct: 1005 EVENEDDADDVD-SENASEASGTESG--GDVCSQDEDREEENGEHDEIDGKAES------ 1055
Query: 477 SEEAEGLGDAESLLISLSVLPFYQQIVV*VK-LKEHQA 587
EAEG+ D L +LP +++++ V+ L +H A
Sbjct: 1056 EGEAEGM-DPHLLEGESELLPQSERVLLSVRPLSKHVA 1092
>At5g26730.1 68418.m03166 expressed protein ; expression supported
by MPSS
Length = 268
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Frame = +3
Query: 447 QLDSMIKEPESEEAEGLGDA-ESLLISLSVLPFYQQIVV*VKLKEHQAFKMM 599
+L+++ +EPE+EE E LGD+ + +L+ + + +V K+K + F M+
Sbjct: 37 RLETIEEEPEAEERERLGDSHKPMLVKAKMKVEKGKSIVKAKVKSGKVFYML 88
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Frame = +3
Query: 291 VVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLST-PADTEENSPQNDQDNQ--LDSM 461
VVE GN+ +E E ++ GA+++ S + D ++T P + + P DQ + + S
Sbjct: 375 VVENGNSKSESEDSKMQSEIGAVDDGS--VSDGSINTHPESQDASDPTCDQGGKQHISSE 432
Query: 462 IKEP-ESEEAEGLGDA 506
+KE ++ +E + DA
Sbjct: 433 VKEVLDAPASEEISDA 448
>At5g66540.1 68418.m08389 expressed protein ; supported by
full-Length cDNA gi:12057175 from [Arabidopsis thaliana]
Length = 524
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +3
Query: 312 DAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAE 491
D DEMD+D S +++E I N + + EE +++++ + +E E EE E
Sbjct: 109 DDIDEMDMDGFDSDDVDDEDKEIESN--DSEGEDEEEEEEDEEEEE-----EEEEEEEEE 161
Query: 492 GLGDAESL 515
GD E +
Sbjct: 162 KDGDNEGI 169
>At5g04460.1 68418.m00443 expressed protein
Length = 863
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 384 DNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGLGDAES 512
D C+S + + ++P+ D+DN+ D +++ E EG AES
Sbjct: 34 DECISFGSCSSVHNPE-DEDNEDDQLVRRRRRSELEGDNLAES 75
>At4g26380.1 68417.m03795 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 1016
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Frame = +3
Query: 321 DEMDIDETASGAMNEESAY--IGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEG 494
+ MD+D S + G + ST +D+E +S +N + DS+ EPE E
Sbjct: 385 NSMDLDSQPRPLRKVVSVFSQYGFDVNSTVSDSESDSSENYVSHIKDSLKLEPEPELISF 444
Query: 495 LGDAESLLISLSVLPFYQQIV 557
+ SL+IS++ P +++++
Sbjct: 445 IHRIGSLVISMN--PNWEKLI 463
>At1g30650.1 68414.m03748 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 430
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +1
Query: 58 SDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDVTTEPEEL 207
S A + D E+ D+ DNQ+A +L D+ DD + EEL
Sbjct: 331 SSSAIKDERGDDMELENVDDDDDNQIAPYRPELHDHQHQPDDFFADLEEL 380
>At4g32330.2 68417.m04600 expressed protein
Length = 436
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 270 PAQEEHPVVEQGNADAEDEMDIDETASGAMNEESA 374
P +EE V NAD ED ET S MNE+ A
Sbjct: 391 PTEEEAQVTVSSNADVEDS---HETVSPRMNEDRA 422
>At4g32330.1 68417.m04599 expressed protein
Length = 437
Score = 28.7 bits (61), Expect = 4.3
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 270 PAQEEHPVVEQGNADAEDEMDIDETASGAMNEESA 374
P +EE V NAD ED ET S MNE+ A
Sbjct: 392 PTEEEAQVTVSSNADVEDS---HETVSPRMNEDRA 423
>At3g51070.1 68416.m05592 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 895
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = +3
Query: 279 EEHPVVEQGNADA-EDEMDIDETASGAMNEESAY-IGDNCLSTPADTEENSPQNDQD--N 446
+E P VEQGN E + + D T + A +E G S + EEN +Q+ N
Sbjct: 191 KEQPDVEQGNKQGQEQDSNTDVTFTDATKQEQPMETGQGETSETSKNEENGQPEEQNSGN 250
Query: 447 QLDSMIKEPESEEAEGLGDAE 509
+ E ++ +E G E
Sbjct: 251 EETGQQNEEKTTASEENGKGE 271
>At1g80000.2 68414.m09359 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +1
Query: 49 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD--DVTTEPEELAANGG 222
K+ + HSD H G V DN+ + D+ D D D V E +A N
Sbjct: 44 KLRAAIQIHSDEHSGVVVVDSDDNEGLHIEDSYGDDDDEEEDGDYGQVDDHVEYIADNND 103
Query: 223 PT 228
T
Sbjct: 104 KT 105
>At1g80000.1 68414.m09358 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Frame = +1
Query: 49 KMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNNSASD--DVTTEPEELAANGG 222
K+ + HSD H G V DN+ + D+ D D D V E +A N
Sbjct: 44 KLRAAIQIHSDEHSGVVVVDSDDNEGLHIEDSYGDDDDEEEDGDYGQVDDHVEYIADNND 103
Query: 223 PT 228
T
Sbjct: 104 KT 105
>At5g22650.2 68418.m02647 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 223
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 252 RPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMN-EESAYIGDNCLSTPADTEENSP 428
+P+ PA+E+ E+ +D EDE + D+ + M+ +E D + + EE +P
Sbjct: 58 KPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETP 117
Query: 429 QNDQ 440
+ +
Sbjct: 118 KKPE 121
>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
splice site at exon 3, AC acceptor splice site at exon
4;
Length = 306
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 252 RPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMN-EESAYIGDNCLSTPADTEENSP 428
+P+ PA+E+ E+ +D EDE + D+ + M+ +E D + + EE +P
Sbjct: 141 KPAEVKPAEEKPESDEEDESDDEDESEEDDDSEKGMDVDEDDSDDDEEEDSEDEEEEETP 200
Query: 429 QNDQ 440
+ +
Sbjct: 201 KKPE 204
>At3g13780.1 68416.m01739 expressed protein
Length = 309
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 EQGNADAEDEMDIDETASG-AMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEP 473
++G AD E+E D DET G +++E A + + EE ++D D++ D +E
Sbjct: 257 QRGRADVEEEDDDDETLGGFIVSDEEAKL--------EEEEEEEDESDVDDEEDEDEEEE 308
Query: 474 E 476
E
Sbjct: 309 E 309
>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}, SP|P40991 Nucleolar protein NOP2
{Saccharomyces cerevisiae}; contains Pfam profile
PF01189: NOL1/NOP2/sun family
Length = 682
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 279 EEHPVVEQGNADAE--DEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQL 452
E++ V + + D E D D D+ + +EE D + ++ +ND++
Sbjct: 64 EDYEVTDDSDEDDEVSDGSDEDDISPAVESEEIDESDDGENGSNQLFSDDEEENDEETLG 123
Query: 453 DSMIKEPESEEAEGLGDAES 512
D ++ E+ EG DA+S
Sbjct: 124 DDFLEGSGDEDEEGSLDADS 143
>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
SP|P46087 Proliferating-cell nucleolar antigen p120
(Proliferation-associated nucleolar protein p120) {Homo
sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
family
Length = 671
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/79 (20%), Positives = 34/79 (43%)
Frame = +3
Query: 267 PPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDN 446
PP +++ + + + E+ DE NE+S ++ +D +E + D+
Sbjct: 37 PPLKKQRKCISEKKPLKKPEVSTDEEEEEEENEQSDEGSESGSDLFSDGDEEGNNDSDDD 96
Query: 447 QLDSMIKEPESEEAEGLGD 503
D + + E+AE L +
Sbjct: 97 DDDDDDDDDDDEDAEPLAE 115
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = +3
Query: 276 QEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLD 455
QE+H +V + + E+E++++E A +E IGD E+ ++D D+
Sbjct: 137 QEDHELVNEEGEELEEEIEVEEEAGEFADE----IGDG-------AEDLDSEDDDDDHAI 185
Query: 456 SMIKEPESEEAE 491
+K E+ + E
Sbjct: 186 EEVKHGETVDVE 197
>At1g48380.1 68414.m05404 root hair initiation protein root hairless
1 (RHL1)
Length = 355
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/65 (24%), Positives = 28/65 (43%)
Frame = +3
Query: 234 QRCFGRRPSIAPPAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADT 413
QR G++ + A + E +GN EDE + E S + E + G+ ++ +
Sbjct: 250 QRNSGKKFNFAETSSEASSGESEGNTSDEDEKPLLEPESSTRSREESQDGNGITASASKL 309
Query: 414 EENSP 428
E P
Sbjct: 310 PEELP 314
>At1g12650.1 68414.m01469 expressed protein similar to KED
(GI:8096269) [Nicotiana tabacum]; similar to rRNA
processing protein EBP2 (SP:P36049) [Saccharomyces
cerevisiae]
Length = 248
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 557 GVGEVEGAPSVQDDESSTMDEDIAEGGVASSDD 655
G G+ EG+ S E S DED++ V+SSD+
Sbjct: 3 GAGKFEGSSSKIVFEDSEEDEDLSCSSVSSSDE 35
>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 554 SGVGEVEGAPSVQDDESSTMDEDIAEGGVASSDDVNDI**CRT 682
+GV E +G S DD SST D + GVA+ ++ C++
Sbjct: 558 NGVAERKGL-STMDDSSSTCSNDSIQSGVANGSYKGNVLNCQS 599
>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 554 SGVGEVEGAPSVQDDESSTMDEDIAEGGVASSDDVNDI**CRT 682
+GV E +G S DD SST D + GVA+ ++ C++
Sbjct: 558 NGVAERKGL-STMDDSSSTCSNDSIQSGVANGSYKGNVLNCQS 599
>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 900
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +2
Query: 53 WNRTLLLTAI--LTMARKCRLKPITRITRLPILSMICLTIIQQVTM*PLSLRNLLRMVV 223
W T L ++ + +++ LK I +++ + +CL+ + M P S++NL ++VV
Sbjct: 623 WEGTQPLRSLKQMDLSKSENLKEIPDLSKAVNIEELCLSYCGSLVMLPSSIKNLNKLVV 681
>At4g21660.1 68417.m03138 proline-rich spliceosome-associated (PSP)
family protein similar to SP|Q13435 Splicing factor 3B
subunit 2 (Spliceosome associated protein 145) (SAP 145)
(SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa
subunit) {Homo sapiens}; contains Pfam profiles PF04046:
PSP, PF04037: Domain of unknown function (DUF382)
Length = 584
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +3
Query: 276 QEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQ-NDQDNQL 452
+EE E+ + E+EMD +E G + ++ + TP E Q + D L
Sbjct: 410 EEEEEEEEEEEEEQEEEMDEEELEDGTESVDTLSSTPTGIETPDAIELRKDQRKEPDRAL 469
Query: 453 DSMIKEPESEEAEG--LGDAESLLI 521
+++E A G LG + + +I
Sbjct: 470 YQVLEEKGESVAPGTLLGTSHTYVI 494
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +3
Query: 405 ADTEENSPQNDQDNQLDSMIKEPESEEAEGLG---DAESLLISLSVL 536
A+ +E ++D D+ D + E ESE + +G D + LL+ VL
Sbjct: 335 AEDDEVDEEDDSDDDTDDVSDEDESENDDDMGMGFDVDYLLVQGQVL 381
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 79 DSHDGAEVSPQADNQDNQVADTIDDLPDNNSASDDV----TTEPEELAANGG 222
++HD A+ Q D QD+ + D + D + + +EPEE A GG
Sbjct: 124 EAHDQAQYQAQGDVQDHNGDEVQDKVEDEEGIPEHLESLQKSEPEEDATVGG 175
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Frame = +3
Query: 309 ADAEDEMDIDETASGAMNEESAYIGDNCLSTPA-DTEENSPQNDQDNQLD--SMIKEPES 479
++ E DIDE A+ E+ Y GD+ S ++EE + +++ +++ S IK E
Sbjct: 280 SEESKEKDIDEKANIEEARENNYKGDDASSEVVHESEEKTSESENSEKVEDKSGIKTEEV 339
Query: 480 EEA 488
E++
Sbjct: 340 EDS 342
>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 27.5 bits (58), Expect = 9.8
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = +3
Query: 318 EDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQNDQDNQLDSMIKEPESEEAEGL 497
EDEM E ASG +E+ N S+ + TE++ D+ +L MI E E +
Sbjct: 4 EDEMKKGE-ASGETSEKMGLSRKNSGSSLSPTEDDEEDEDKKLELGPMIALKEQLERD-- 60
Query: 498 GDAESL 515
D ESL
Sbjct: 61 KDDESL 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,898
Number of Sequences: 28952
Number of extensions: 255230
Number of successful extensions: 1131
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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