Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00445
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32270.1 68417.m04591 UDP-sugar transporter-related contains ...    28   2.1  
At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ...    27   4.8  
At4g13820.1 68417.m02141 disease resistance family protein / LRR...    26   8.3  
At2g34830.1 68415.m04276 WRKY family transcription factor              26   8.3  
At2g20850.1 68415.m02457 leucine-rich repeat protein kinase, put...    26   8.3  

>At4g32270.1 68417.m04591 UDP-sugar transporter-related contains
           weak similarity to Swiss-Prot:Q95YI5 UDP-sugar
           transporter UST74c [Drosophila melanogaster]
          Length = 364

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 135 RKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRP 239
           +  +V ELK ++ A   +LP S GP +  W ST P
Sbjct: 246 KTATVGELKMAVEAAFSHLPIS-GPGKISWFSTTP 279


>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
           (RRS1) family protein contains Pfam profile PF04939:
           Ribosome biogenesis regulatory protein (RRS1); similar
           to Ribosome biogenesis regulatory protein homolog
           (Swiss-Prot:Q15050) [Homo sapiens]
          Length = 318

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
 Frame = +3

Query: 198 SGGPFRAFWPSTRPIALLLEHHPRRNRL*LRQSPHEERARIKNSLRCI-----HFCLIIA 362
           SGG F    P  +P     +HH     +  R   + E+ +  N L  I     H  L + 
Sbjct: 223 SGGKFDKKLPGEKPPKKQGKHHKYLPVVSGRGDVNAEKEQTNNVLSKIFSKHSHEILNVG 282

Query: 363 SAINRCDYKKKKKK 404
            AIN  + KK+KKK
Sbjct: 283 KAINMYNVKKEKKK 296


>At4g13820.1 68417.m02141 disease resistance family protein / LRR
           family protein contains leucine rich-repeat (LRR)
           domains Pfam:PF00560, INTERPRO:IPR001611; similar to
           disease resistance protein [Lycopersicon esculentum]
           gi|3894383|gb|AAC78591
          Length = 719

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 247 SAIGLVEGQNALNGPPEYGRYMRQAEMEVFNSLTEHF 137
           S   LV G+N  NGP ++G     + + V + L  +F
Sbjct: 253 SLTSLVLGRNDFNGPLDFGNISSPSNLGVLSLLENNF 289


>At2g34830.1 68415.m04276 WRKY family transcription factor
          Length = 427

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 66  AVTLSSAPASIGPWS--TTMTCSTARKCSVRELKTSISAC 179
           A+T+SSA  +  PW      T ++ R C + +   + S+C
Sbjct: 132 AITVSSAAVAASPWGMINVNTTNSPRNCLLVDNNNNTSSC 171


>At2g20850.1 68415.m02457 leucine-rich repeat protein kinase,
           putative contains Pfam domains PF00560: Leucine Rich
           Repeat and PF00069: Protein kinase domain
          Length = 772

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 137 KMFRKRVENLHFSLPHVPSIFGRSIQG 217
           K  RKR ++   S PH+ S +GR+ +G
Sbjct: 336 KCLRKREDSEQLSKPHLTSEYGRAREG 362


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,972,901
Number of Sequences: 28952
Number of extensions: 182454
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)