Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00444
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 153 1e-37
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 36 0.040
SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14) 29 3.5
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74) 29 3.5
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 4.6
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 6.1
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 28 6.1
SB_24120| Best HMM Match : SEC-C (HMM E-Value=4.7) 28 8.1
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 153 bits (372), Expect = 1e-37
Identities = 81/141 (57%), Positives = 99/141 (70%), Gaps = 11/141 (7%)
Frame = +2
Query: 167 CTSCRWRQRQARIP---DETGRPDKQPCSSSD------AKGHSCYRPRRDGERKRKSVRG 319
C W+ RI D+ G P KQ ++ +KGHSCYRPRR GERKRKSVRG
Sbjct: 7 CLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRG 66
Query: 320 CIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 499
CIVD+ LSVL+LVIV+KG Q+IPGLTD +PRRLGPKR KIRK+FNLSKEDDVR+YV++
Sbjct: 67 CIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIR 126
Query: 500 RVLQLRKEKKTLN--PDIRHL 556
R L ++ KK + P I+ L
Sbjct: 127 RPLPEKEGKKAKSKAPKIQRL 147
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +3
Query: 126 EVEADQLGDEWNGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMQR 260
EV + LGDEW GYV R+ GGNDKQGFPMKQG++TN RVRLL+ +
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSK 46
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/58 (50%), Positives = 32/58 (55%)
Frame = +1
Query: 508 PAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQR 681
P KEGK K + KAPKIQRLVTPVVLQ A+YAKLLA+R
Sbjct: 130 PEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKR 184
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 35.5 bits (78), Expect = 0.040
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -3
Query: 251 QKTNTAVCQDALFHRESLLVVAASDTKYIAVPFIA*LISLYFGAHALFVK 102
Q+ + A+ D L H +SL V+ SD + +++P I + Y H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306
>SB_56343| Best HMM Match : RRM_1 (HMM E-Value=3.2e-14)
Length = 273
Score = 29.1 bits (62), Expect = 3.5
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 293 ERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASK-IRKLFNLSK 469
+ K KSV+ VD + S L R AQE L DG ++L A K + K L K
Sbjct: 191 DNKNKSVKATTVDKSASENKLKRKRNSAQE--NLDDGVKRKKLKDAGAMKSLVKELELEK 248
Query: 470 EDDVRRYVVKRVLQLRKEKK 529
+ R +V+ + +KEK+
Sbjct: 249 LVEQRSELVQEKQKKKKEKE 268
>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
Length = 172
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +2
Query: 311 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 451
VR C +D +VLA + + A E GLT+G V GP R +++
Sbjct: 86 VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 401 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 499
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 621 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSV 529
L+QSE+ T T NY P++L C GF V
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +3
Query: 132 EADQLGDEWNGYVL--RVAGGNDKQGFPMK 215
E D+ G EW G+V G D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844
>SB_24120| Best HMM Match : SEC-C (HMM E-Value=4.7)
Length = 139
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 180 RHEVHSRSIHRLTDQPLLRRPCAFRKRY 97
+H H R R+ D+P +R PC R +
Sbjct: 30 KHHFHGRGTGRIFDRPTIRIPCLQRSLF 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,026,677
Number of Sequences: 59808
Number of extensions: 455218
Number of successful extensions: 1369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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