Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00444
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             116   1e-26
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   112   2e-25
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    31   0.71 
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   1.6  
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica...    28   6.6  
At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP...    27   8.8  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  116 bits (280), Expect = 1e-26
 Identities = 63/105 (60%), Positives = 74/105 (70%), Gaps = 5/105 (4%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTDTEKPRMRGPK 138

Query: 431 RASKIRKLFNLSKEDDVRRYV--VKRVLQLRKEKKTLN-PDIRHL 556
           RASKIRKLFNL KEDDVR+YV   +R    +K KK    P I+ L
Sbjct: 139 RASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVSKAPKIQRL 183



 Score =  110 bits (265), Expect = 7e-25
 Identities = 49/81 (60%), Positives = 60/81 (74%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWNGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+ GYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
           FPMKQGVLT  RVRLL+ R T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = +1

Query: 526 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQR 681
           +  K   KAPKIQRLVTP+ LQ                 S  A+Y KLLA R
Sbjct: 169 KKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASR 220


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  112 bits (270), Expect = 2e-25
 Identities = 56/81 (69%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
 Frame = +2

Query: 257 KGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPK 430
           +G  C+R   RR GER+RKSVRGCIV  +LSVL LVIV+KG  ++PGLTD   PR  GPK
Sbjct: 79  RGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPK 138

Query: 431 RASKIRKLFNLSKEDDVRRYV 493
           RASKIRKLFNL KEDDVR YV
Sbjct: 139 RASKIRKLFNLKKEDDVRTYV 159



 Score =  111 bits (268), Expect = 3e-25
 Identities = 50/81 (61%), Positives = 60/81 (74%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWNGYVLRVAGGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+ GYV ++ GG DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKQGVLTNSRVRLLMQRAT 266
           FPMKQGVLT  RVRLL+ R T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 25/56 (44%), Positives = 29/56 (51%)
 Frame = +1

Query: 514 KEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQR 681
           K+GKE +K    APKIQRLVTP+ LQ                 S  A+Y KLLA R
Sbjct: 169 KKGKEVSK----APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASR 220


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 392 LTDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLQLRKEK 526
           + +G+V ++   ++A +  K   + KEDDVR+  +KR+  ++K++
Sbjct: 288 VVEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKE 332


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to RAD54
           [Drosophila melanogaster] GI:1765914; contains Pfam
           profiles PF00271: Helicase conserved C-terminal domain,
           PF00176: SNF2 family N-terminal domain
          Length = 888

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 380 EIPGLTDGNVPRRLGPKRASKIRKL 454
           E+PGL D  V   L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644


>At3g06860.1 68416.m00814 fatty acid multifunctional protein (MFP2)
           identical to fatty acid multifunctional protein (AtMFP2)
           GB:AF123254 [gi:4337027] (Arabidopsis thaliana) (fatty
           acid beta-oxidation); contains Pfam profiles PF02737
           (3-hydroxyacyl-CoA dehydrogenase, NAD binding domain),
           PF00378 (enoyl-CoA hydratase/isomerase family protein),
           PF00725 (3-hydroxyacyl-CoA dehydrogenase)
          Length = 725

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 230 KQPCSSSDAKGHSCYRPRRDGERKRKSVRGCIV--DANLSVLALVIVRKGAQEIPGLTD- 400
           K P    DA         R G  K   V   +V  D    ++ +   ++G  ++PG+TD 
Sbjct: 246 KHPLMCLDAIEVGIVSGPRAGLEKEAEVASQVVKLDTTKGLIHVFFSQRGTAKVPGVTDR 305

Query: 401 GNVPRRL 421
           G VPR++
Sbjct: 306 GLVPRKI 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,348,640
Number of Sequences: 28952
Number of extensions: 296368
Number of successful extensions: 851
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)