Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00442
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    29   1.0  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    28   1.4  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    27   2.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   3.2  
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi...    27   3.2  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    26   5.6  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   5.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   5.6  
SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G family|Schizosaccha...    26   7.4  
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe...    26   7.4  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    26   7.4  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    25   9.8  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   9.8  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +3

Query: 30  NTDTPSMPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLEDQL 191
           N +   +  +  +V  N+ ++ A+E+ N+K  + +QKE    + Q KR+ + +L
Sbjct: 606 NNEQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEERIAQQKREEKRRL 659


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 366 ESK*V-EAAKTASLNNGSTSFGCKQNKFSPC 277
           ESK + E  KT+S++ GS    CKQ+K SPC
Sbjct: 593 ESKNIFETPKTSSIHAGSIIL-CKQSKKSPC 622


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = +2

Query: 257 DNTVKAVHGENLFCLHPNDVEPLFNEAVLAASTYFDSKRQKIPNVIDEEKNKFIQYLGKE 436
           D ++KA+  E        DV+ L  +AVL            I  + DE K K  Q+L ++
Sbjct: 25  DESLKALEKETGLVSETEDVKRL-KQAVLQGDWITAEAAFSIMQLRDESKRKEAQFLLQK 83

Query: 437 LKCLQ 451
            +CL+
Sbjct: 84  QRCLE 88


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 305  PNDVEPLFNEAVLAASTYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQALNLQN 469
            PN+   L  ++V +    F     K+P+  D+E+ K +Q   ++LK L   N  N
Sbjct: 1818 PNNSSQLSIDSVRSGMRPFSLS--KVPHQFDDEEGKALQIFREKLKDLNCKNSMN 1870


>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 173

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 543 WRFLVD*AFHETEKFILSSVITCLLFCRFNAWRHFSSLPKYWMNLFFSSSMTFG 382
           W+ L+  A + +  F LS+ I  L+   FN +         W+  F  +S T+G
Sbjct: 110 WQQLIRAAMYSS--FYLSATILMLIVMSFNGYAILFGFVGAWIGFFLFASDTYG 161


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 505  LCFMEGLVNKEPPLDDNEYEAKYQESYR 588
            +CF  GL +    L DN+ EA   E+YR
Sbjct: 953  ICFHRGLDDSHEQLVDNDDEAAIFETYR 980


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 87  LAKAIEA--FNKKGKMGSQKEIGAYLTQLKRDLEDQLPRYGLMNDG 218
           ++KA+EA   +K   +   KEI + L QLK DL+   P   L+  G
Sbjct: 45  ISKALEAGMSDKAAYVTQGKEIISLLNQLKYDLQHNRPLKPLVGQG 90


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 550 DNEYEAKYQESYRKAIETFDQRRNR 624
           D+E +  YQE+Y KA    D  R R
Sbjct: 752 DDERDKAYQEAYAKAKNVIDAERER 776


>SPAC12G12.16c ||SPAC18B11.01c|nuclease, XP-G
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 496

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 326 FNEAVLAASTYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQALNLQNNRHVITELKMNF 505
           F +  L   T F S+   IP +      K I+Y G     L+ALN++    + T+    F
Sbjct: 365 FQDYCLMCGTDFTSR---IPKIGPVRALKLIRYYGNAFDVLKALNVEEKYIIPTDYIKKF 421

Query: 506 SVSWK 520
             + K
Sbjct: 422 LTAKK 426


>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 342

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +1

Query: 559 YEAKYQESYRKAIETFDQR 615
           Y+ + +ESY+K I+ FD++
Sbjct: 179 YDIRTEESYKKVIDEFDEK 197


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 350 STYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQAL 457
           + + ++ +QKIP+ +D  K   +QY   +L  LQ L
Sbjct: 410 NNWLENLQQKIPSEVDNGKVSGLQYSAFKLLMLQRL 445


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 266 VKAVHGENLFCLHPNDVEPLFNEAVLAASTYFDSKRQKIPNVID 397
           +  VHG NLF +  +  +  FN   L ++   +S+   +P  +D
Sbjct: 622 IVVVHGNNLFIIDQHASDEKFNYEHLKSNLVINSQDLVLPKRLD 665


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 353 TYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQALNLQNNRHVITELKMNFSVS 514
           T++DSKR+KI      EK+ ++  +G  L       L  +      LK +FS S
Sbjct: 242 TFYDSKREKICFTFPGEKH-YMTVMGSILALCYTPTLGTDSSTNEGLKKSFSSS 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,242,720
Number of Sequences: 5004
Number of extensions: 64440
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)