Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00442
(820 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302... 33 0.36
08_02_1284 - 25864049-25864202,25864690-25864880,25865053-258658... 31 1.1
03_02_0821 - 11519840-11519989,11520333-11520476,11520556-115207... 30 2.5
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 30 2.5
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 30 2.5
07_03_1760 - 29289997-29290377,29290539-29290755,29291152-292939... 29 5.9
06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534 29 5.9
02_05_0250 + 27153048-27154453,27154546-27154885 29 5.9
02_01_0304 + 2037718-2037939,2038169-2038384,2038862-2039329,203... 29 5.9
06_03_0488 - 21361131-21361226,21361922-21362124,21362252-213624... 28 7.8
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 7.8
01_05_0025 + 17298734-17299669 28 7.8
>02_05_1234 -
35127322-35128378,35128423-35128467,35130016-35130275,
35130610-35131365,35132115-35132122,35133559-35134327
Length = 964
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 245 KRSIDNTVKAVHG--ENLFCLHPNDVEPLFNEAVLAASTYFDSKRQKIPNVIDEEK 406
K +I N +G NL L PND L +E V +TY D QK P ++ E K
Sbjct: 479 KENIANHCSGKNGTVHNLLVLKPNDALCLLSEKVFEKATYLD--EQKNPELVKEAK 532
>08_02_1284 -
25864049-25864202,25864690-25864880,25865053-25865895,
25865953-25866896,25867052-25867190,25867259-25867334,
25867666-25867788,25867869-25867952,25868145-25868235,
25868448-25868532,25868620-25868784,25868872-25868928,
25870141-25870302
Length = 1037
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Frame = +2
Query: 311 DVEPLFNEAVLAASTYFDSKRQKIPNVIDEEK------NKFIQYLGKELKCLQALNLQNN 472
++EP+ + S F +KR ++P + D+E + + ++G+E+ C + LN+QN+
Sbjct: 300 EIEPIIAPFFIYPSPLFTAKRPRLPGMTDDETEMDGLLKRAMPWVGEEI-CKKDLNIQNS 358
>03_02_0821 -
11519840-11519989,11520333-11520476,11520556-11520754,
11521309-11521412,11521488-11521598,11521653-11521771,
11521858-11522002,11522516-11522568,11522676-11522721,
11522818-11522963,11523691-11523760,11524930-11525083,
11525186-11525307,11525612-11525835,11526317-11526371,
11526793-11526972
Length = 673
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 459 FNAWRHFSSLPKYWMNLFFSSS 394
FN+W+H+ P YWM FF S
Sbjct: 518 FNSWQHY-GCPNYWMLHFFKDS 538
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/65 (23%), Positives = 31/65 (47%)
Frame = +1
Query: 550 DNEYEAKYQESYRKAIETFDQRRNRPTEFPEDVFKLSLMQHMAAQFINLQAINRSKNRKQ 729
D + K S+ + D + +E P V+KL L++++ A + + + ++S N
Sbjct: 520 DKMHLPKQAFSHTLCLRVLDLGGRQVSELPSSVYKLKLLRYLDASSLRISSFSKSFNHLL 579
Query: 730 FMMAL 744
+ AL
Sbjct: 580 NLQAL 584
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 222 TCRRS*GHNVVIDLLNHALIELGMHRSLF 136
TCR + GH VV+DL + L G+H +LF
Sbjct: 82 TCRMASGHVVVLDLSDGYLQSNGLHPALF 110
>07_03_1760 -
29289997-29290377,29290539-29290755,29291152-29293953,
29294134-29294178,29294274-29294358,29294791-29294875,
29296429-29296530,29296747-29296851,29296940-29297029,
29297163-29297258
Length = 1335
Score = 28.7 bits (61), Expect = 5.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 176 FRRSITTLWPYERRQVSETSIRSKRSIDNTVKAVH 280
+RR++ P E ++SE S +SK+S+ A+H
Sbjct: 608 YRRALKLARPVEGEKLSENSTKSKKSLRENTLALH 642
>06_03_0254 - 18807077-18807185,18808018-18808090,18809426-18809534
Length = 96
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 80 VMSNTNSFTWHTWRVGIARSI 18
V+S + F W+ W +GIARSI
Sbjct: 39 VLSKLSHFYWYLWFLGIARSI 59
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Frame = +2
Query: 311 DVEPLF---NEAVLAASTYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQALNLQNNRHV 481
DV+P F + + D K+Q + V ++EK + + Y G L+ + + + H
Sbjct: 317 DVDPSFVAEKKGSIETVVTEDGKKQAMDVVTEDEKKQDVDYEGSSLEEMPLRSAFSYTHE 376
Query: 482 ITELKMNFSVSWKA*STRNLH*MTTNMK 565
+ E + N + K T N H TT K
Sbjct: 377 VKE-RFN-RILKKYVGTHNFHNFTTRTK 402
>02_01_0304 +
2037718-2037939,2038169-2038384,2038862-2039329,
2039419-2040171
Length = 552
Score = 28.7 bits (61), Expect = 5.9
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +3
Query: 78 NQALAKAIEAFN----KKGKMGSQKEIGAYLTQLKRDLEDQLPRYGLM---NDGKYRKLA 236
++ALAK +N K GK+ +K YLT+LKR+ E + M D + +K
Sbjct: 65 DKALAKLFSTYNGCKWKGGKLRLEKAKEHYLTRLKREWEQEAAAAQEMPASADVESKKEK 124
Query: 237 FEAKEVLIIQSKQCTVKIYFACIR 308
E + ++ +K + IYF +R
Sbjct: 125 LELNKAVLDSTK---INIYFPKLR 145
>06_03_0488 -
21361131-21361226,21361922-21362124,21362252-21362410,
21362694-21362813,21365602-21365801,21366243-21366286
Length = 273
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 380 IPNVIDEEKNKFIQYLGKELKCLQALNLQNNRHVITELKMNFSVSW 517
IPN +K K I+YLG E++ + +N + ELK + S+
Sbjct: 59 IPNSYPPDKQKLIKYLGAEVRITEG-PYRNMEKKVEELKKSIKNSY 103
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.3 bits (60), Expect = 7.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 459 FNAWRHFSSLPKYWMNLFFSSS 394
FN+W+ + S P YWM F S
Sbjct: 705 FNSWKQYGS-PSYWMQTIFRES 725
>01_05_0025 + 17298734-17299669
Length = 311
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 138 KEIGAYLTQLKRDLEDQLPRYGLMNDGKYRKLAFEAKEVLIIQ 266
K+ G YL ++ D ED+L G + DGK L+ K ++++
Sbjct: 267 KQGGLYLNNIRIDSEDKLVEEGDVVDGKVLLLSAGKKNKMVVR 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,918,124
Number of Sequences: 37544
Number of extensions: 366625
Number of successful extensions: 997
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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