Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00442
(820 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37041| Best HMM Match : GBP (HMM E-Value=0) 36 0.039
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 32 0.64
SB_41358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0) 29 3.4
SB_11706| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0) 29 3.4
SB_55569| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_43331| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_37041| Best HMM Match : GBP (HMM E-Value=0)
Length = 466
Score = 35.9 bits (79), Expect = 0.039
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +3
Query: 3 YTKIMDAACNTDTPSMPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLE 182
Y+K M++ D P + + H + A+ F+ KMG ++ Y+ QL ++++
Sbjct: 293 YSKAMESVVGGDMPYLSPNELERKHLETRDSALSHFHGTRKMGGKEFSEKYVEQLLKEID 352
Query: 183 DQLPRYGLMNDGK 221
+ + +ND K
Sbjct: 353 ETFENFVKLNDSK 365
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 260 NTVKAVHGENLFCLHPNDVEPLFNEAVLAASTYFDSKRQKIPNVID-EEKNKFIQYLGKE 436
NTV + + + CLHPN V + +AV + + ++ Q +P + +N IQ KE
Sbjct: 498 NTVTQILPKAVSCLHPNTVIQILPKAV--SCLHRNTVIQILPKAVSCLHRNTVIQIFPKE 555
Query: 437 LKCL 448
+ CL
Sbjct: 556 VSCL 559
>SB_41358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 702 CLQVNKLSCHVLHQR*FEYIFWKFCRPISSLVECLN 595
CLQV+ +LH+R + F +P+S+ V+C+N
Sbjct: 75 CLQVDSRGSPLLHERESVFCFNFILKPVSTGVKCIN 110
>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 712
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -2
Query: 423 YWMNLFFSSSMTFGIFCLLESK*VEAAKTASLNNGSTSFGCKQNKFSPCTA 271
YW L+F + MT G + L A L G TS GCK + S TA
Sbjct: 391 YWAALYFIALMTVGYYVLFN------LLVAILVEGFTSSGCKTSAISQDTA 435
>SB_11706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 260 NTVKAVHGENLFCLHPNDVEPLFNEAVLAASTYFDSKRQKI 382
NT + + + CLH N V + EAVL S ++ R+KI
Sbjct: 159 NTAIPILPKAVLCLHRNTVTQILPEAVLCLSIQSEAGRRKI 199
>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 1457
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = -2
Query: 423 YWMNLFFSSSMTFGIFCLLESK*VEAAKTASLNNGSTSFGCKQNKFSPCTA 271
YW L+F + MT G + L A L G TS GCK + S TA
Sbjct: 648 YWAALYFIALMTVGYYVLFN------LLVAILVEGFTSSGCKTSAISQDTA 692
>SB_55569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 56
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 526 VNKEPPLDDNEYEAKYQESYRKAIETFDQRRNRPTE 633
V +PP DD + +E++RK E + R+NR E
Sbjct: 12 VKYQPPSDDELIRQREEEAWRKREEEEEMRKNRELE 47
>SB_2774| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 69 VTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKR 173
V H L ++ FN+ GK+GSQK + L +R
Sbjct: 12 VVHPIVLLSVVDHFNRMGKVGSQKRVVGVLLGSRR 46
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 28.7 bits (61), Expect = 6.0
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 87 LAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLEDQLPRYGLMNDGKYRKLAFEAKEVLIIQ 266
L + A ++ +MG +K+ L Q+ LED+L RY N +LA + ++ ++
Sbjct: 227 LRSELSAIVERSRMGDRKQ--HELEQIITRLEDELSRYSAQNIQLEERLADKMAQIASLE 284
Query: 267 SK 272
K
Sbjct: 285 GK 286
>SB_16904| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 28.7 bits (61), Expect = 6.0
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Frame = +2
Query: 206 YERRQVSETSIRSKRSIDNTVKAV-HGENLFCL--HPNDVEPLFNEAVLAASTYFDSKRQ 376
YER + + +IR++R I T KAV + E L + H E E A + + R
Sbjct: 732 YERHKCEQHAIRNRRLIGKTFKAVQYQEELQAIKDHLRLQEDKMRELTQALNKQTEDNR- 790
Query: 377 KIPNVIDEEKNKFIQYLGKELKCLQALNLQNNRHVITELKMNFS 508
N+++E N +QY ELK AL Q + +L+++ S
Sbjct: 791 ---NLLNE--NAQLQYTKGELKA--ALEKQKKEYEKLKLELDQS 827
>SB_43331| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 135 QKEIGAYLTQLKRDLEDQLPRYGLMNDGKYRKLAFEAKEVLI 260
+ E GA +Q+ D LPR +ND +Y K F +V++
Sbjct: 55 ETESGAPASQVPASTIDLLPRKKFLNDREYMKELFYRNDVVV 96
>SB_19572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 823
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 505 LCFMEGLVNKEPPLDDNEYEAKYQESYRKAIETFDQRRNRPTEFPEDVFKL 657
+C L ++ L+DN Y KY + + A E ++ + T ED FK+
Sbjct: 651 VCTSSSLYREDTQLEDNPYYEKYADKIKAAQELLQKQED--TRSFEDKFKV 699
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,839,313
Number of Sequences: 59808
Number of extensions: 453800
Number of successful extensions: 1361
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -