Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00442
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    40   0.002
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    40   0.002
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    40   0.002
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    32   0.57 
AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical ...    30   1.7  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    29   3.0  
U23484-13|AAC46774.1|  399|Caenorhabditis elegans Hypothetical p...    29   3.0  
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    29   4.0  
U80842-11|AAB37941.2|  231|Caenorhabditis elegans Hypothetical p...    28   7.0  
U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified vi...    28   7.0  
Z73906-13|CAA98118.1|  162|Caenorhabditis elegans Hypothetical p...    28   9.2  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AY594301-1|AAT92095.1|  162|Caenorhabditis elegans mitochondrial...    28   9.2  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    28   9.2  

>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = +3

Query: 3   YTKIMDAACNTDTPSMPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLE 182
           Y + M+  C  DTP M    +   H++    AI  F    KMG       +L +L+ DL+
Sbjct: 378 YQREMEEVCGGDTPYMSTNELLEHHDRVKNIAIREFRNARKMGGVDFSMQFLERLESDLQ 437

Query: 183 DQLPRYGLMNDGKYRKLAFEAKEVLI 260
           +    Y  +N+GK    +     VL+
Sbjct: 438 ESYENYLKVNNGKNLFKSMRTPTVLV 463


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = +3

Query: 3   YTKIMDAACNTDTPSMPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLE 182
           Y + M+  C  DTP M    +   H++    AI  F    KMG       +L +L+ DL+
Sbjct: 378 YQREMEEVCGGDTPYMSTNELLEHHDRVKNIAIREFRNARKMGGVDFSMQFLERLESDLQ 437

Query: 183 DQLPRYGLMNDGKYRKLAFEAKEVLI 260
           +    Y  +N+GK    +     VL+
Sbjct: 438 ESYENYLKVNNGKNLFKSMRTPTVLV 463


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = +3

Query: 3   YTKIMDAACNTDTPSMPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLE 182
           Y + M+  C  DTP M    +   H++    AI  F    KMG       +L +L+ DL+
Sbjct: 378 YQREMEEVCGGDTPYMSTNELLEHHDRVKNIAIREFRNARKMGGVDFSMQFLERLESDLQ 437

Query: 183 DQLPRYGLMNDGKYRKLAFEAKEVLI 260
           +    Y  +N+GK    +     VL+
Sbjct: 438 ESYENYLKVNNGKNLFKSMRTPTVLV 463


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
            protein Y32H12A.8 protein.
          Length = 3901

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +1

Query: 430  QRTEVSPSIKSTKQQTRYN*TQDELLCFMEGLVNKEPPLDDNEYEAKYQESYRKAIETFD 609
            Q  ++  S K   +Q +     +E+L   E L  +E  +D+ EYE + +E +R++ E  D
Sbjct: 1026 QEEQLEGSRKRKLEQIQEEDEDEEILDEEEELFEEEEEVDE-EYEGEVEEVHRESSEELD 1084

Query: 610  QRRNRPTEFPED 645
                     PE+
Sbjct: 1085 DEEEEEEVMPEE 1096


>AF022980-2|AAG24188.3|  343|Caenorhabditis elegans Hypothetical
           protein T03D3.5 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 16  WMLRAIPTRQVCQVKEFVLLITKHWLKQSKRSTKKGKWAHKKRSV 150
           W  + +P  +   +K+F L++ K++   S    K  +  +KKRS+
Sbjct: 276 WKYQLLPINEGSAIKQFRLVVPKNFPSPSNSEAKPPRKVYKKRSI 320


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 556 EYEAKYQESYRKAIETFDQRRNRPTEFPEDVFKLSLMQHMAAQF 687
           E EAK+ E  RKA E  D    +  EF E +  L +  H +  +
Sbjct: 7   EVEAKWMEKVRKASEERDDIGKKIDEFEEKIDSLQIQVHRSETY 50


>U23484-13|AAC46774.1|  399|Caenorhabditis elegans Hypothetical
           protein EEED8.14 protein.
          Length = 399

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 209 ERRQVSETSIRSKRSIDNTVKAVHGENLFCLHPNDVEPLFNEAVL 343
           E  Q  E  I  K  + N VK++HGE +      +V  LFNE V+
Sbjct: 150 ESIQYQEFKIH-KEEVLNDVKSIHGEIMEMKKKQNVSELFNEEVI 193


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
 Frame = +1

Query: 532 KEPPLDDNEYEAKYQESYRKAIETFDQRRNRPTEFPEDVFKLSLMQHM-------AAQFI 690
           +E  +DD EY     E   K   +  +++ RPT+  E+ F LSL +         A  +I
Sbjct: 226 EEEDVDDEEYRESSPEVEAKISYSDRKQKKRPTD-EEEWFLLSLSEKFSGPIHEDAKVYI 284

Query: 691 NLQAINRSKNRKQFMMALSFYTNH*VFSGIP 783
              ++   K+R+  +  L       +FS IP
Sbjct: 285 KETSLRYKKHRESLLTRLQDILVRRIFSAIP 315


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
            protein T05H4.3 protein.
          Length = 1152

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 347  ASTYFDSKRQKIPNV--IDEEKNKFIQYLGKELKCLQALNLQNNR 475
            A + FD     +PN+  +D   N     + + LK L +LNLQNN+
Sbjct: 941  ALSRFDCSLFDLPNLESVDLSNNSIKTIIRRPLKTLTSLNLQNNK 985


>U80842-11|AAB37941.2|  231|Caenorhabditis elegans Hypothetical
           protein ZC239.4 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 27  CNTDTPSMPGEGVRVTHNQALAKAIEAFN 113
           CNT  P+  G+  R+ ++  L K IEA++
Sbjct: 194 CNTKAPTFEGQMKRLNYSDRLEKYIEAYS 222


>U64599-2|ABB88205.1|  420|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 6, isoform b
           protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +1

Query: 577 ESYRKAIET--FDQRRNRPTEFPEDVFKLSLMQHMAAQFINLQAINRSKNRKQFMMALSF 750
           E++R A ++  F  RRNRP   PEDV   S   +      NL  +  S   K  M   S 
Sbjct: 297 ENFRTAFKSLLFWSRRNRPLPLPEDVRSTSASTYY-RNSSNLDCLKSSLPIKSTMEPASV 355

Query: 751 Y 753
           Y
Sbjct: 356 Y 356


>Z73906-13|CAA98118.1|  162|Caenorhabditis elegans Hypothetical
           protein D2030.5 protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/77 (22%), Positives = 30/77 (38%)
 Frame = +3

Query: 48  MPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLEDQLPRYGLMNDGKYR 227
           +P   + + H       I+AF  K K G    I   +  +  +    +   G+   G+  
Sbjct: 77  LPNSKIELLHPFGEKSPIQAFLNKNKDGGMHHICIEVRDI-HEAVSAVKTKGIRTLGEKP 135

Query: 228 KLAFEAKEVLIIQSKQC 278
           K+    KEV+ +  K C
Sbjct: 136 KIGAHGKEVMFLHPKDC 152


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
            ZK287.4 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +2

Query: 137  KRDRCIPNSIKA*FRRSITTLWPYERRQVSETSIRSKRSIDNTVKAVHGENLFCLHPNDV 316
            K    +P SI A     +    P    QVS+   +S   + + V A H  N  C  P DV
Sbjct: 865  KTSHLVPESIPAPPFEPVQMPIPAPPAQVSQPQEQSSNMVIDFVPATHASNNLCGQPIDV 924


>AY594301-1|AAT92095.1|  162|Caenorhabditis elegans mitochondrial
           methylmalonyl-CoAepimerase protein.
          Length = 162

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/77 (22%), Positives = 30/77 (38%)
 Frame = +3

Query: 48  MPGEGVRVTHNQALAKAIEAFNKKGKMGSQKEIGAYLTQLKRDLEDQLPRYGLMNDGKYR 227
           +P   + + H       I+AF  K K G    I   +  +  +    +   G+   G+  
Sbjct: 77  LPNSKIELLHPFGEKSPIQAFLNKNKDGGMHHICIEVRDI-HEAVSAVKTKGIRTLGEKP 135

Query: 228 KLAFEAKEVLIIQSKQC 278
           K+    KEV+ +  K C
Sbjct: 136 KIGAHGKEVMFLHPKDC 152


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 466 KQQTRYN*TQDELLCFMEGLVNKEPPLDDNEYEAKYQESYRKAIETFDQRRN 621
           K++ +    + ELL     +  +EP  +D +   K Q   R+ +E+ + RRN
Sbjct: 759 KKKEKLKEKERELLAVSYEVKKEEPESNDEDDNRKDQRKPRRIVESVEDRRN 810


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,818,404
Number of Sequences: 27780
Number of extensions: 353507
Number of successful extensions: 1055
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)