Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00442
         (820 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62900.1 68416.m07066 expressed protein ; expression supporte...    31   1.2  
At2g15440.1 68415.m01766 expressed protein contains Pfam profile...    30   2.1  
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica...    30   2.1  
At1g55960.1 68414.m06418 expressed protein weak similarity to SP...    29   2.8  
At5g52860.1 68418.m06561 ABC transporter family protein                29   3.7  
At5g51200.1 68418.m06349 expressed protein                             29   3.7  
At1g71390.1 68414.m08243 disease resistance family protein / LRR...    29   4.9  
At4g25750.1 68417.m03707 ABC transporter family protein Bactroce...    28   8.6  

>At3g62900.1 68416.m07066 expressed protein ; expression supported
           by MPSS
          Length = 1401

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +2

Query: 224 SETSIRSKRSIDNTVKAVHGENLFCLHPNDVEPLFNEAVLAASTYFDSKRQKIPNVIDEE 403
           +ET++RSK+ + ++  A+  E++     N + P F E   A+S  FD+ ++     +  E
Sbjct: 306 AETNVRSKKGLFDSTDAITKESM---ETNTLYPTFAEKETASSKLFDASKENYNGTVRGE 362


>At2g15440.1 68415.m01766 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 329

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 305 PNDVEPLFNEAVLAASTYFDSKRQKIPNVIDEEKNKFIQYLGKELKCLQAL 457
           P  + P+F  AVLA S  F +K +K   ++ E   K  +   +E  C + L
Sbjct: 227 PGRMAPIFTSAVLAKSKDFGTKTKKTDVLVHEFGRKIERVYSEEFLCEENL 277


>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
           domain-containing protein contains similarity to
           DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
           contains PFam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2
          Length = 673

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
 Frame = +2

Query: 179 RRSITTLWPYERRQ-----VSETSIRSKRSIDNTVKAVHGENLFCLHPNDVEPL-FNEAV 340
           ++ + T  P +RRQ     ++   ++   ++ + +K V  +   C+  +D++ L F E  
Sbjct: 397 KKDVLTELPSKRRQQVFLDLAAKDMKQINALFHELKVVKSKIKDCISEDDIKSLKFIEKN 456

Query: 341 LAASTYFDSKRQKIPNVIDEEKN 409
           L    Y DS   KIP V+D  +N
Sbjct: 457 LINKIYTDSAVAKIPAVLDYLEN 479


>At1g55960.1 68414.m06418 expressed protein weak similarity to
           SP|P53808 Phosphatidylcholine transfer protein (PC-TP)
           {Mus musculus}
          Length = 403

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 7   RRSWMLRAIPTRQVCQVKEFVLLITKHWLKQSKRSTKKGKWAH 135
           R  W +R +P R  C++K F        ++ +K +  KG W++
Sbjct: 236 RSGWRIRQVPGRNACEIKMFHQENAGLNVEMAKLAFSKGIWSY 278


>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 492 SSVITCLLFCRFNAWRHF---SSLPKYWMNLFFSSSMTFGIFCLL 367
           +S++T LL   F    +F    SLPKYW+ ++F S   + +  LL
Sbjct: 473 TSLVTILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALL 517


>At5g51200.1 68418.m06349 expressed protein
          Length = 1808

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +3

Query: 111  NKKGKMGSQKEIGAYLTQLKRDLEDQLPRYGLMNDGK-------YRKLAFEAKEVLI 260
            N++G  GS+  I   +T L   L   + R  L+N+GK       +++LA   KE+ I
Sbjct: 1748 NERGSYGSKSHIQQEVTDLCGKLSPTIDRLALLNEGKVGHNLKVFQRLATTVKEMAI 1804


>At1g71390.1 68414.m08243 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
           [Lycopersicon esculentum] gi|3894391|gb|AAC78595
          Length = 784

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 595 IETFDQRRNRPT-EFPEDVFKLSLMQHMAAQFINLQAINRSKNRKQFMMALSFYTNH 762
           +ET D  RN+ + + P+D+ KLS + +M      LQ       + Q     SF  NH
Sbjct: 648 LETLDLSRNKLSGQIPQDLGKLSFLSYMNFSHNRLQGPVPRGTQFQRQRCSSFLDNH 704


>At4g25750.1 68417.m03707 ABC transporter family protein Bactrocera
           tryoni membrane transporter (white) gene, PID:g3676298
          Length = 577

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 492 SSVITCLLFCRFNAWRHF---SSLPKYWMNLFFSSSMTFGIFCLL 367
           +S +T LL   F    +F    SLPKYW+ ++F S   + +  LL
Sbjct: 461 TSSVTILLAAFFLFSGYFISKESLPKYWLFMYFFSMYKYALDALL 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,940
Number of Sequences: 28952
Number of extensions: 320301
Number of successful extensions: 945
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)