Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00441
(371 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 75 1e-14
Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical pr... 29 1.4
AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore ... 29 1.4
AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore ... 29 1.4
AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine re... 27 3.2
U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical p... 27 4.3
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 5.7
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 5.7
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 5.7
AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine r... 27 5.7
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 5.7
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 26 7.5
AF016419-2|AAG24055.2| 325|Caenorhabditis elegans Serpentine re... 26 7.5
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 26 9.9
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 75.4 bits (177), Expect = 1e-14
Identities = 37/51 (72%), Positives = 42/51 (82%)
Frame = +2
Query: 107 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREK 259
LNN VLFD+ TY+KLYKEV YKLITP+VVSERLKVR SLA+ L EL+ K
Sbjct: 40 LNNMVLFDQATYDKLYKEVITYKLITPSVVSERLKVRASLAKAGLKELQAK 90
Score = 42.7 bits (96), Expect = 8e-05
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 256 KGLIKQVVQHHGQVIYTRATKGDDPV 333
KGL+K VV HHGQV+YTRATK D +
Sbjct: 90 KGLVKCVVHHHGQVVYTRATKEADVI 115
>Z79605-6|CAB01906.3| 323|Caenorhabditis elegans Hypothetical
protein ZK678.4 protein.
Length = 323
Score = 28.7 bits (61), Expect = 1.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 137 TYEKLYKEVPQYKLITP-AVVSERLKVRGSLARRALIELREKVS 265
TYE + K ++K ITP AV + + ARR LI +R+ VS
Sbjct: 184 TYEMIKKVFSKHKTITPFAVPLQNTTLSKLQARRDLIMMRQTVS 227
>AC024776-7|AAK68469.1| 411|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform a protein.
Length = 411
Score = 28.7 bits (61), Expect = 1.4
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -3
Query: 336 CDWIIALGRTRVDHLPMML-DYLFDET--FSLSSMSALLAREPRTFNLSDTTAGVISLYC 166
C +++ +++ H +L + DET S++S+ AL A + NL TTA + LY
Sbjct: 283 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 342
Query: 165 GTSLYSFSYVGLSNNT 118
S S + + NN+
Sbjct: 343 SVSTGPQSTMAMFNNS 358
>AC024776-5|AAK68470.3| 1090|Caenorhabditis elegans Nuclear pore
complex protein protein8, isoform b protein.
Length = 1090
Score = 28.7 bits (61), Expect = 1.4
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -3
Query: 336 CDWIIALGRTRVDHLPMML-DYLFDET--FSLSSMSALLAREPRTFNLSDTTAGVISLYC 166
C +++ +++ H +L + DET S++S+ AL A + NL TTA + LY
Sbjct: 198 CAKFLSVPISKIAHEAHILTQFGHDETSFHSITSIKALEASQSAALNLVATTAKGVRLYF 257
Query: 165 GTSLYSFSYVGLSNNT 118
S S + + NN+
Sbjct: 258 SVSTGPQSTMAMFNNS 273
>AF016428-2|AAO26002.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 65 protein.
Length = 316
Score = 27.5 bits (58), Expect = 3.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 246 SMSALLAREPRTFNLSDTTAGVISLYCG 163
S++ ++ E F+LSDT ++ L+CG
Sbjct: 2 SVNRTISLENGKFDLSDTIVNIVELFCG 29
>U00048-11|AAB53833.1| 995|Caenorhabditis elegans Hypothetical
protein C05D11.1 protein.
Length = 995
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 113 NQVLFDKPTYEKLYKEVPQYKLITPAVVSERL-KVRGSL 226
N +LFD+ EKL++++ + + P V E+L +VR +L
Sbjct: 694 NCILFDELVLEKLHEKISKDVMKNPEAVLEKLEQVRSAL 732
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 3 RLRPNSLKKHRRRRKDPVAAKPRRRSGPKEK 95
R P+ K RR+ AA PRRR P+ +
Sbjct: 467 RRSPSGSKSRSPRRRRSPAAAPRRRQSPQRR 497
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 33 RRRRKDPVAAKPRRRSGP 86
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3
Query: 33 RRRRKDPVAAKPRRRSGP 86
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AF016449-12|AAG24004.2| 365|Caenorhabditis elegans Serpentine
receptor, class t protein71 protein.
Length = 365
Score = 26.6 bits (56), Expect = 5.7
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = -3
Query: 342 SLCDWIIALGRTRVDHLPMMLDYLFDETFSLSSMSALLAREPRTFNLSDTTAGVISLYCG 163
S+C ++A+ R V+ P + + F L+ L +P T N +LYC
Sbjct: 118 SVCSILLAIERC-VEINP---HFPLEMLFLLNFQPELYECQPDTINNIVLVLCTSTLYCY 173
Query: 162 TSLYSFSYVGLSNNTWLFNLSR 97
S + G S ++WL+ R
Sbjct: 174 ISYHLLFNFGYSTSSWLYKSKR 195
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 5.7
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = -1
Query: 164 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 45
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 26.2 bits (55), Expect = 7.5
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = -3
Query: 234 LLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPP 55
++ R+P ++ ++ + C S FS+V + R L F+F PP
Sbjct: 340 IIRRQP-SYGSRSSSIATSQMRCDQSEIDFSWVNEEEDKLKRESKRIDSLPEFYFGMDPP 398
Query: 54 PDPS 43
P PS
Sbjct: 399 PVPS 402
>AF016419-2|AAG24055.2| 325|Caenorhabditis elegans Serpentine
receptor, class j protein32 protein.
Length = 325
Score = 26.2 bits (55), Expect = 7.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 369 FFFFFNLYHSLCDWIIALG--RTRVDHLPMMLDYLFDETFSLSSM 241
+F FN++HSL D + +G R +L + D + E SLS +
Sbjct: 45 YFAIFNIFHSLLDIFVPIGVHGYRYCYLIFLSDGILLEKSSLSML 89
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 25.8 bits (54), Expect = 9.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 1 EGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 93
EG G + + RIRW+ +EE+V R+
Sbjct: 28 EGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,933,831
Number of Sequences: 27780
Number of extensions: 190097
Number of successful extensions: 589
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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