Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00440
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    92   4e-20
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    91   1e-19
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   5.6  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.7  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 92.3 bits (219), Expect = 4e-20
 Identities = 40/70 (57%), Positives = 51/70 (72%)
 Frame = +2

Query: 44  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 223
           M  V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 224 LRHIYIRSPV 253
            RHIY+R  V
Sbjct: 61  ARHIYLRKQV 70



 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +1

Query: 256 VKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDL 435
           V  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDL
Sbjct: 72  VGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDL 131

Query: 436 DRI 444
           DRI
Sbjct: 132 DRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 39/70 (55%), Positives = 51/70 (72%)
 Frame = +2

Query: 44  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 223
           M  V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI
Sbjct: 1   MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60

Query: 224 LRHIYIRSPV 253
            RHIY+R  V
Sbjct: 61  ARHIYLRKQV 70



 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 30/63 (47%), Positives = 43/63 (68%)
 Frame = +1

Query: 256 VKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDL 435
           V  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR ++ QG+RDL
Sbjct: 72  VGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRISQQGQRDL 131

Query: 436 DRI 444
           DRI
Sbjct: 132 DRI 134


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 159 QLASKSWLRMTLIGSMCVVL 218
           +L SKSWL +  +G +C+ L
Sbjct: 359 KLLSKSWLSLEPVGQICISL 378


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -2

Query: 432 VSSTLCGENATT----VLNFLNKLQCLQRLQSLAC 340
           VSS  C E   T     L+ +N ++C+  LQS+ C
Sbjct: 261 VSSKNCFEEPITPRFQALHRINMIECIPELQSVVC 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,677
Number of Sequences: 5004
Number of extensions: 37760
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)