Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00440
         (550 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          68   6e-12
SB_9755| Best HMM Match : Sushi (HMM E-Value=0)                        29   3.3  
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_37662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 32/57 (56%), Positives = 39/57 (68%)
 Frame = +1

Query: 274 IFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 444
           I  GRK  G  PSHF   S S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRI
Sbjct: 32  IRAGRKNRGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +2

Query: 116 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVR 211
           +G +K+P+ +DLVKT +FKELAPYDPDW+Y+R
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIR 33


>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
          Length = 1351

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 312 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 404
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 21  TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51


>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 312 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 404
           TF   ++  C +GF ++G      +S+G+WS
Sbjct: 286 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316



 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 312 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 404
           TF   +   C +GF ++G  + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142


>SB_38875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1116

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 156  RQLASKSWLRMTLIGSMCV-VLPSFVIFTFAHLLSKDCDQDLWWAQT*WSNTFTFLQVIR 332
            RQ++S S    TL+ ++CV VL    +  F    S+D   D+   +T W N    L    
Sbjct: 833  RQISSGSKPARTLVAALCVIVLAGAELIDFLDCSSRDVSSDM--IRT-WINQSKSLDPTS 889

Query: 333  QYC 341
            +YC
Sbjct: 890  EYC 892


>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 67  C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 186
           C   QDC + RC  +KNG  + T A G CK S    + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339


>SB_37662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 222 SFVIFTFAHLLSKDCDQDLWWA 287
           S +++  A  +SKDC+  LWWA
Sbjct: 81  SVLMYELAWKMSKDCNDLLWWA 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,576,887
Number of Sequences: 59808
Number of extensions: 309373
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)