Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00440
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...    87   7e-18
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...    87   1e-17
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...    86   2e-17
At4g16095.1 68417.m02440 disease resistance protein-related cont...    29   1.5  
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote...    29   2.0  
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063...    29   2.7  
At5g16500.1 68418.m01928 protein kinase family protein contains ...    27   8.3  
At2g25280.1 68415.m03024 expressed protein                             27   8.3  
At2g02480.1 68415.m00187 DNA polymerase-related weak similarity ...    27   8.3  

>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 35/63 (55%), Positives = 49/63 (77%)
 Frame = +2

Query: 56  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
           TVKDV   + VK  AAHLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 236 YIR 244
           Y+R
Sbjct: 66  YLR 68



 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 29/58 (50%), Positives = 42/58 (72%)
 Frame = +1

Query: 271 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 444
           +I+GG KRNG  P HFC+SSG +AR  LQ L+ + +V+    GGR +T+ G+RDLD++
Sbjct: 78  RIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKITSSGQRDLDQV 135


>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 36/63 (57%), Positives = 48/63 (76%)
 Frame = +2

Query: 56  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
           TVKDV     VK  A+HLK++GK+++P   D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65

Query: 236 YIR 244
           Y+R
Sbjct: 66  YLR 68



 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +1

Query: 271 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 444
           +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 78  RIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRITSSGQRDLDQV 135


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +2

Query: 56  TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 235
           TVKDV     VK  A+HLK++GK+++P   D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6   TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65

Query: 236 YIR 244
           Y+R
Sbjct: 66  YLR 68



 Score = 73.7 bits (173), Expect = 7e-14
 Identities = 32/58 (55%), Positives = 42/58 (72%)
 Frame = +1

Query: 271 KIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 444
           +I+GG KRNG  P HFC+SSG IAR  LQ LE + +VE    GGR +T+ G+RDLD++
Sbjct: 78  RIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRITSSGQRDLDQV 135


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 400 HRPELSQQASMPPTIAKPCVQYCLM 326
           H P L  Q   PP +   C++YC M
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCM 110


>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 666

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 101 AHLKKTGKVKVPEHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 247
           +H   +  V  P   D  + T  F+ ++ ++  WF   C+A++ H+ + S
Sbjct: 15  SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64


>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
           Domain of unknown function (DUF383) and  PF04064: Domain
           of unknown function (DUF384)
          Length = 339

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +1

Query: 316 FCRSSGSIARKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRI 444
           FCRSSG  A    + + ++ + + K +DG ++L    RR L +I
Sbjct: 143 FCRSSGETADDQFEHVGSILVNISKTEDGRKLLLEPKRRLLKQI 186


>At5g16500.1 68418.m01928 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 65  DVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELA 181
           +VE D+    V A  K+T + +  E    VKT  F+ELA
Sbjct: 30  NVEHDEFRPPVVATTKRTEEREPAEQQPPVKTFNFRELA 68


>At2g25280.1 68415.m03024 expressed protein
          Length = 291

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 223 DGSTTHIEPIRVIRSQLFEASCLYKIHVLRYLDFAR-FF*VSSDSFNNLVLFNILYCDGT 47
           +G+   + PI ++ +   E   +Y   + +Y+D  + FF VSSD  +    FN ++ D T
Sbjct: 143 EGNNVKVVPI-LVGAVSPENEAMYGELLAKYVDDPKNFFSVSSDFCHWGSRFNYMHYDNT 201

Query: 46  HLALC*QPEEKKKK 5
           H A+    E   KK
Sbjct: 202 HGAIHKSIEALDKK 215


>At2g02480.1 68415.m00187 DNA polymerase-related weak similarity to
           DNA polymerase III holoenzyme tau subunit [Thermus
           thermophilus] GI:2583049
          Length = 1218

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 440 LSRSRLPCVVRMRXXXXXXXXXFNASNDCKALRAILPDDLQKCEGVTPLRLR 285
           +S SRL C+ + +          NA +D         +DL+K  G +PL L+
Sbjct: 178 ISSSRLDCLSKYQPRDDIVARNCNAGSDDTEEELSNSEDLRKVTGASPLLLK 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,645,538
Number of Sequences: 28952
Number of extensions: 207505
Number of successful extensions: 476
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)