Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00439
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    31   0.23 
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    28   1.6  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    28   1.6  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   3.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.9  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   6.5  
SPBC2A9.02 |||NAD dependent epimerase/dehydratase family protein...    25   8.6  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    25   8.6  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    25   8.6  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 417  AQLTEMSLPTYSNRWTPKKINEWCSIRQ*C*VR 515
            A++ ++ L  YS++ TP K+NEW +    C +R
Sbjct: 1910 AEVAKLLLEVYSSQDTPTKLNEWANYFMLCLIR 1942


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 31  LTNYRPLRTSLKKTWSVVYKVLCKASMVY 117
           ++NYRPL   LK  W  V  +L    +VY
Sbjct: 335 ISNYRPLDIWLKGYWGRVVSILLNTILVY 363


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 502 HCRILHHSLIFFGVQRFEYVGKLISVSW 419
           H R L HSLI   ++R EY+  +    W
Sbjct: 38  HARFLKHSLIQVSIERIEYLYSIFPNIW 65


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = -1

Query: 423 AGPFILFSYTFISFELSVRASPGRKYDPLLRFP----TYSK 313
           A P +LF+ T  S  LS+   P +++DP+L+FP    TYS+
Sbjct: 55  AKPKLLFTPTKSS--LSIGNFPYKEFDPVLKFPGIHYTYSR 93


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 110 WSTAYNGSGRIYTSYIIDGLLWI 178
           + T Y  S R +T +++ GL+WI
Sbjct: 573 YGTGYIFSKRFFTGWVVVGLIWI 595


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = +3

Query: 138 GSILPIS-LTDYYGS----VFNTTLNAVDGLSQIVEATGDALFNFLRTRVFASGAQ 290
           G IL IS +  YY S    ++N +  AV+GLSQ +    D  +N   T V   G Q
Sbjct: 128 GRILQISSVAGYYPSPCLSMYNASKFAVEGLSQTIMRELDPNWNIAITIVQPGGMQ 183


>SPBC2A9.02 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 284 SAGGPAYLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMK 415
           +AGG  Y+ + E +  L KG     G+  T   +D  +Y+   K
Sbjct: 42  AAGGTPYIGTLEDLDTLKKGVAQCDGVIHTAFVHDFSIYQEACK 85


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +3

Query: 282 GAQGVPLIYIALNTLGTLVKGHIFYLDLPLL 374
           G  G PL  IALNTL TL K H+   D+P++
Sbjct: 355 GLSGPPLKPIALNTLRTLRK-HL-SSDIPII 383


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 420 GPFILFSYTFISFELSVRASPGRKYDPLLRFPTYSKLY 307
           G  +LF+Y+ +SF L+  A+    YD  L   ++S  Y
Sbjct: 5   GCLLLFAYSLLSFSLTA-ATIDETYDESLFIKSFSSRY 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,024
Number of Sequences: 5004
Number of extensions: 66065
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)