Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00439
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297...    30   2.2  
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915...    29   5.1  
02_02_0146 - 7171656-7172044,7172383-7175008                           28   6.8  
04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571     28   9.0  

>06_03_0551 -
           22027441-22028224,22029015-22029344,22029510-22029778,
           22030530-22031453,22037761-22038360,22040049-22040267
          Length = 1041

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +2

Query: 242 CFVQLPAYQSVRQWSAGGPAYLYSFEYVGNLSKGSYFLPGL--ALTDNSNDMKVYENKMK 415
           C V +   +SV    AG    + S   +   +    F      A T+N N  +V E +  
Sbjct: 235 CIVVITTQESVAVHCAGANGLVCSITCLQATAASDLFQQAFQEAFTNNRNMFEVQEFQRN 294

Query: 416 GPAHGDELAYIFEPLDTEE 472
           G ++ +   YIFE  + EE
Sbjct: 295 GDSYEETFRYIFEGDEQEE 313


>09_04_0484 +
           17990020-17990488,17990930-17991009,17991122-17991586,
           17994670-17994756,17994887-17995018,17995102-17995293,
           17995409-17995495,17995621-17996295
          Length = 728

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 168 YYGSVFNTTLNAVDGLSQIVEATGDALFNFLRTRVFASGAQGVPLI 305
           Y+ +V  TT+  V+GL  IV     A+ +FL   +  +G QGV ++
Sbjct: 558 YFAAVLFTTMMVVEGLMMIV---ASAVPDFLMGIITGAGVQGVMML 600


>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 302 YLYSFEYVGNLSKGSYFLPGLALTDNSNDMKVYENKMKGP 421
           YLY     G++ KG   LP L       D++++ NK+ GP
Sbjct: 317 YLYYNNLTGSIPKGVSMLPNLT------DIRLFNNKLSGP 350


>04_03_0475 - 16343083-16344213,16344394-16345380,16345467-16345571
          Length = 740

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 328 PNVFKAI*ISGTPCAPLANTLVRRKLNKASPVAST 224
           P+VF A+  S  P  P   T  +R +  A+PV +T
Sbjct: 591 PSVFLALTDSDAPVKPAKRTYKKRAVGSATPVVAT 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,788,524
Number of Sequences: 37544
Number of extensions: 406741
Number of successful extensions: 804
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)