Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00439
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...    30   1.9  
At1g51590.1 68414.m05808 mannosyl-oligosaccharide 1,2-alpha-mann...    29   2.4  
At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR...    28   5.7  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    27   9.9  

>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 165 DYYGSVFNTTLNAVDGLSQIVEATGDALF 251
           DY  S+F TT+  V GL    + +GD +F
Sbjct: 173 DYAASMFETTIRVVGGLLSAYDLSGDKIF 201


>At1g51590.1 68414.m05808 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 560

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 165 DYYGSVFNTTLNAVDGLSQIVEATGDALF 251
           DY  S+F TT+  V GL    + +GD +F
Sbjct: 172 DYDASMFETTIRVVGGLLSAYDLSGDKMF 200


>At5g18360.1 68418.m02160 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 900

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 516 DNFVDLISKFAHSLNGEENNTKT----NLMGLQPYSEENDQFL 632
           DN  DLI K A S++ E N+T +    NL+G+  +  E D  L
Sbjct: 158 DNEADLIDKIAMSISYELNSTLSRDSYNLVGIDNHMRELDSLL 200


>At5g18700.1 68418.m02219 protein kinase-related contains protein
            kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 593  HQIRLCIVLFSIKAVREFGNEIYKVVP---NLASLSDTAPLIDFLRCPTVRICRQAHLRE 423
            + ++LC+ L S   +        KVV    NL    +   + DFL  PT+ +CR   LR 
Sbjct: 1136 NNVKLCLALASAPEMESKLLSQLKVVRRIGNLLEFVNAKDMEDFLE-PTLSLCRAFLLRS 1194

Query: 422  LG 417
            LG
Sbjct: 1195 LG 1196


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,090,031
Number of Sequences: 28952
Number of extensions: 337011
Number of successful extensions: 742
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)