Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00438
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   120   3e-28
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   120   3e-28
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    29   0.61 
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    29   0.81 
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    27   1.9  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    27   2.5  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    26   4.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    26   5.7  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   5.7  
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   10.0 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    25   10.0 
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    25   10.0 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   10.0 

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  120 bits (288), Expect = 3e-28
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R+RK   A+R GRH G
Sbjct: 61  FRIRKTHAAKRLGRHTG 77



 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 44/99 (44%), Positives = 60/99 (60%)
 Frame = +3

Query: 219 HRST*KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 398
           H +   G     GKR+GTA ARMP   +W                + KID+HLYH+LY++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126

Query: 399 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR +
Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  120 bits (288), Expect = 3e-28
 Identities = 52/77 (67%), Positives = 67/77 (87%)
 Frame = +1

Query: 22  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
           M++L+ QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP  +HSR
Sbjct: 1   MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60

Query: 202 ARVRKNTEARRKGRHCG 252
            R+RK   A+R GRH G
Sbjct: 61  FRIRKTHAAKRLGRHTG 77



 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 44/99 (44%), Positives = 60/99 (60%)
 Frame = +3

Query: 219 HRST*KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMK 398
           H +   G     GKR+GTA ARMP   +W                + KID+HLYH+LY++
Sbjct: 67  HAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLE 126

Query: 399 AKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           AKGN FK+KR L+E+I R KAE  RTK++ +Q +ARR +
Sbjct: 127 AKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRAR 165


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -3

Query: 165 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 76
           +I +H++DV  G+ V  LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 144 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 49
           +VLS +    ++D  +  PHLL  +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = -1

Query: 515 LYSAGLSLVAKHLRPGLLSLLPVDVLHEHTLVLEHITLRLHV 390
           +Y+  LSL  K +   + +LL + + H HTLV E +TL+L V
Sbjct: 319 VYTVQLSLPVKSVESSVQALLFMVLPHLHTLVNE-LTLKLFV 359


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = -2

Query: 568 FLLLGGNTFLAALACLLHFIRRASAWS-LS-----IFVLAFSAFFLWMYSMSTRLFLNTL 407
           F  LG    LAA+  LLH ++++   S LS     +F+L +   +L ++     L+   +
Sbjct: 4   FSALGDMAHLAAIFLLLHRMKKSKTCSGLSLKSHLLFLLVYVTRYLNLFWRYKSLYYFLM 63

Query: 406 PFAFM*SEWYRCLSIFLAVLYFRSNFLKTL 317
              F+ SE Y C   +L ++  R  + K L
Sbjct: 64  RIVFIASESYIC---YLMLMTLRPTYDKRL 90


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   GSHRVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEI 117
           G  +++    K  K L +S+        W D NE+NE+
Sbjct: 9   GDKKIQKKKKKNTKSLQSSLESAENDPFWTDANELNEL 46


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 460 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 368
           AF LW+YS+   L+L       +    W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 327 LKPFVFVPIVPSVAYAHWLYLFSYQATVTTLSTCFCVFA 211
           L    +VPI P   +++W    S QA VTT +T F +++
Sbjct: 133 LSDISYVPI-PHKEHSNWPVHCSSQAIVTTSNTTFSIWS 170


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
 Frame = +1

Query: 82  KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 228
           K WLDP  ++++  T + +++++ I    ++K+           P    + A   KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348

Query: 229 RRKGR 243
           R+  R
Sbjct: 349 RKSLR 353


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +1

Query: 136 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 252
           +++R  +KD +   +PV+V S A   ++T     G   G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 601 GFVFSSEGLQQFLLLGGNTFLAALACLLHFIR 506
           G VFS + L +F+  GGN F+ A + L   IR
Sbjct: 83  GPVFSPKSLLEFVQSGGNLFVVAGSQLPEGIR 114


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 25  SSLKLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 150
           S + + K L  S MRCG+K    W++ + +    NT+   +  K
Sbjct: 317 SYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,730
Number of Sequences: 5004
Number of extensions: 52944
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)