Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00438
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   2e-31
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)                30   1.5  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    29   4.5  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)                      28   6.0  
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)                    28   6.0  
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)                   28   6.0  

>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score =  132 bits (320), Expect = 2e-31
 Identities = 59/80 (73%), Positives = 70/80 (87%)
 Frame = +1

Query: 13  RVRMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAV 192
           +V + +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP  V
Sbjct: 26  KVHVGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIV 85

Query: 193 HSRARVRKNTEARRKGRHCG 252
           HSRARVRK  EAR KGRH G
Sbjct: 86  HSRARVRKADEARSKGRHSG 105



 Score =  130 bits (315), Expect = 8e-31
 Identities = 63/94 (67%), Positives = 70/94 (74%)
 Frame = +3

Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
           KG     GKR+GTANARMPQK +W                AKKID H+YHSLYMK+KGNV
Sbjct: 100 KGRHSGHGKRKGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNV 159

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           FKNKRVLMEYIH+KKAEKAR+K+LSDQAEARR K
Sbjct: 160 FKNKRVLMEYIHKKKAEKARSKLLSDQAEARRNK 193


>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
          Length = 1578

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 351 FCTSGAIFLKPFVFVPIV--PSVAYAHWLYLFSYQATVTTLSTCFCVFADTSAGVYCYRF 178
           +CT   I+++P         P V ++     +  Q TV+T  T    F  T+ G+Y    
Sbjct: 236 YCTKSVIYVRPDEAATFGWDPHVVFSDNGIAYPRQVTVSTPDTAH--FVKTTVGLYKIEN 293

Query: 177 LDDETILDHLTDVL 136
             ++ I+  +TDVL
Sbjct: 294 AKEQVIVPEVTDVL 307


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +1

Query: 127 NSRQNIRKMIKDGLVIKK--PVAVHSRARVRKNTEARRKGRHCGLVREEVQ 273
           +S  NIRK IKDG   K   P    S  +VRK +  RR   +   V++  Q
Sbjct: 95  SSNTNIRKRIKDGDASKSNVPQRTTSHDQVRKVSGQRRHSTYTSQVKKHEQ 145


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 156 QGWSRHQETCSSTLPRSCPQKHRST*KGSSLWLGKRRG 269
           Q  S +  T   T PRS  Q  R+T  GSS  L +RRG
Sbjct: 401 QSSSLYPSTPLPTTPRSGSQAERTTSSGSSDKLSRRRG 438


>SB_51145| Best HMM Match : RCSD (HMM E-Value=1.3)
          Length = 248

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = -2

Query: 568 FLLLGGNTFLAALAC 524
           F L+GG TFLAALAC
Sbjct: 70  FALMGGLTFLAALAC 84


>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
           F+  +  MEY  +   EKA  K+   Q++A RIK
Sbjct: 80  FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIK 113


>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
          Length = 787

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 552 PPRRRNCCRPSLEKTKPRLPLRSK 623
           PP  +N  +P ++KTKP  PL ++
Sbjct: 199 PPSEKNAFQPPMKKTKPSSPLLTR 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,208,482
Number of Sequences: 59808
Number of extensions: 422076
Number of successful extensions: 1397
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)