Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00438
(674 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal pro... 118 4e-27
AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical ... 39 0.004
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 31 0.57
U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 31 0.75
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 31 0.99
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 29 2.3
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 29 2.3
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 29 4.0
Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical ... 28 5.3
Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical p... 27 9.2
AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical ... 27 9.2
AC024830-6|AAF59601.3| 603|Caenorhabditis elegans Hypothetical ... 27 9.2
>AF002196-4|AAB53979.1| 198|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 19 protein.
Length = 198
Score = 118 bits (284), Expect = 4e-27
Identities = 50/77 (64%), Positives = 67/77 (87%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
MS+L+LQKRLA++V++CGK +VWLDPNE++EI+ NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
R R+ EARRKGRH G
Sbjct: 61 FRAREYEEARRKGRHTG 77
Score = 109 bits (262), Expect = 2e-24
Identities = 52/94 (55%), Positives = 62/94 (65%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKRRGTANARMP+K LW AKK+D+HLYH LY++AKGN
Sbjct: 72 KGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNN 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNK+ L+EYI +KK E R K L+DQA+ARR K
Sbjct: 132 FKNKKNLIEYIFKKKTENKRAKQLADQAQARRDK 165
>AF098999-4|AAC68729.1| 659|Caenorhabditis elegans Hypothetical
protein W04C9.6 protein.
Length = 659
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = -3
Query: 333 IFLKPFVFVPIVPSVAYAHWLYLF-SYQATVTTLSTCFCVFADTSAGVYCYRFLDDETIL 157
IF++PF IV + W F ++ + ++T FC+FAD S + R DD+ +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460
Query: 156 DHLTDVLSGVGVCDLIDFI 100
+ + SG + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 31.5 bits (68), Expect = 0.57
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 118 ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 252
++T+S +N+R ++ D +K V H R ++E R+K R G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099
>U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical
protein K09E3.1 protein.
Length = 675
Score = 31.1 bits (67), Expect = 0.75
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 519 RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 623
RRHAS +PP NC +P+ ++T+ + L ++
Sbjct: 14 RRHASEGGTPIPPTPANCGKPTKKRTRGHVSLATR 48
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 30.7 bits (66), Expect = 0.99
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 566 PPSWRQYVPRGACVPPSLYSAGLSL 492
P SW QY P+G C+ P A S+
Sbjct: 221 PNSWHQYQPKGTCIQPVTLPASWSI 245
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 450 RKKAEKARTKMLSDQAEARRI--K*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 623
+KK +K R+ SD++ R+ K RR S R P + S + +PR P RS+
Sbjct: 130 KKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSR 189
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 450 RKKAEKARTKMLSDQAEARRI--K*RRHASAARNVLPPRRRNCCRPSLEKTKPRLPLRSK 623
+KK +K R+ SD++ R+ K RR S R P + S + +PR P RS+
Sbjct: 130 KKKKKKKRSSSSSDESSDERVERKRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSR 189
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 28.7 bits (61), Expect = 4.0
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 300 VPSVAYAHWLYLFSYQATVTTLSTCFCVF 214
+PS+ + WL++F + TL C C++
Sbjct: 214 LPSILQSKWLWIFVIGIVLPTLCCCCCIY 242
>Z35604-5|CAA84680.2| 269|Caenorhabditis elegans Hypothetical
protein ZK1058.5 protein.
Length = 269
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 130 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 243
S +N+RKMIK G V+ + ++ A +R EAR R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208
>AF036692-8|AAB88329.1| 162|Caenorhabditis elegans Hypothetical
protein C44B12.6 protein.
Length = 162
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 540 RNVLPPRRRNCCRPSLEKTKPRLP 611
R++L P+ R+C PS++K+ LP
Sbjct: 51 RHMLTPKSRDCSEPSIDKSSEVLP 74
>Z78542-10|CAB01751.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 312 FVPIVPSVAYAHWLYLFSYQATVTTL 235
F+ IVP+ Y ++ Y +YQ +VT L
Sbjct: 300 FIKIVPTKIYGYFSYTMAYQYSVTFL 325
>AL031620-6|CAA20929.2| 428|Caenorhabditis elegans Hypothetical
protein C18B12.6 protein.
Length = 428
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 312 FVPIVPSVAYAHWLYLFSYQATVTTL 235
F+ IVP+ Y ++ Y +YQ +VT L
Sbjct: 300 FIKIVPTKIYGYFSYTMAYQYSVTFL 325
>AC024830-6|AAF59601.3| 603|Caenorhabditis elegans Hypothetical
protein Y55F3BR.8a protein.
Length = 603
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -2
Query: 370 LSIFLAVLYFRSNFLK 323
L++ LA++YFRSNF K
Sbjct: 8 LAVILAIIYFRSNFSK 23
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,068
Number of Sequences: 27780
Number of extensions: 309516
Number of successful extensions: 972
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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