Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00438
(674 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 118 5e-27
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 116 2e-26
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 115 3e-26
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.8
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 28 6.6
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 28 6.6
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.6
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 6.6
At5g43130.1 68418.m05265 transcription initiation factor IID (TF... 27 8.7
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.7
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 118 bits (283), Expect = 5e-27
Identities = 52/77 (67%), Positives = 63/77 (81%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R R EA+RKGRH G
Sbjct: 61 SRARALNEAKRKGRHSG 77
Score = 111 bits (267), Expect = 4e-25
Identities = 54/94 (57%), Positives = 62/94 (65%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GT AR+P K LW +KKIDRH+YH +YMK KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNV 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLME IH+ KAEKAR K L+DQ EA+RIK
Sbjct: 132 FKNKRVLMESIHKMKAEKAREKTLADQFEAKRIK 165
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 116 bits (278), Expect = 2e-26
Identities = 52/77 (67%), Positives = 63/77 (81%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R RK A+ KGRH G
Sbjct: 61 SRARKMKIAKMKGRHSG 77
Score = 108 bits (260), Expect = 3e-24
Identities = 52/94 (55%), Positives = 60/94 (63%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GT AR+P K LW KKID+H+YH +YM+ KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNV 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 115 bits (276), Expect = 3e-26
Identities = 50/77 (64%), Positives = 65/77 (84%)
Frame = +1
Query: 22 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 201
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 202 ARVRKNTEARRKGRHCG 252
+R R+ A+RKGRH G
Sbjct: 61 SRARQLNIAKRKGRHSG 77
Score = 111 bits (266), Expect = 5e-25
Identities = 54/94 (57%), Positives = 60/94 (63%)
Frame = +3
Query: 234 KGSSLWLGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNV 413
KG GKR+GT AR+P K LW KKIDRH+YH +YMK KGNV
Sbjct: 72 KGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNV 131
Query: 414 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRIK 515
FKNKRVLME IH+ KAEKAR K LSDQ EA+R K
Sbjct: 132 FKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 165
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +3
Query: 357 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 467
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.8
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -2
Query: 493 WSLSIFVLAFSAFFLWMYSMSTRL 422
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 381 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRIK*R---RHASAARN 545
H + G V + + +++ + AEK ++ +++ ++RR + R R S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 546 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 629
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +3
Query: 381 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRIK*R---RHASAARN 545
H + G V + + +++ + AEK ++ +++ ++RR + R R S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 546 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 629
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 182 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 87
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 98 GSNHTFFLPHRITEAASLFCSLRELI 21
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At5g43130.1 68418.m05265 transcription initiation factor IID
(TFIID) component TAF4 family protein weak similarity to
SP|O00268 Transcription initiation factor TFIID 135 kDa
subunit {Homo sapiens}; contains Pfam profile PF05236:
Transcription initiation factor TFIID component TAF4
family
Length = 712
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +3
Query: 186 SSTLPRSCPQKHRST*KGSSLWLGKRRGTANARMPQKE 299
SS P Q ST S LG +G ANARMP K+
Sbjct: 352 SSVSPSMTTQLDASTTMNSRGPLGTSQGGANARMPPKK 389
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 354 AKKIDRHLYHSLYMKAKGNVFKNKRVL 434
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,756
Number of Sequences: 28952
Number of extensions: 291633
Number of successful extensions: 859
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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