Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00437
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.8  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   6.4  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    26   6.4  
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    26   6.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   6.4  

>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = -3

Query: 405 KLLSSGEGRVVLHFHLFG-------TQLTCLQTRLAAEIRVVMMFAELATNYETAVSENG 247
           KLL+S      +H   FG       TQ        A  ++ VM    L +   +A +EN 
Sbjct: 444 KLLTSSTSNEYIHGEFFGGNEMERTTQEIVTSFAKAPNVKYVMQ--SLLSKATSATNENS 501

Query: 246 LSVHFAGVVRALTVTWTLDSCELY 175
           +   +A +V   +   T+DS E+Y
Sbjct: 502 VRAFWAFMVLLKSDVETVDSLEMY 525


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 204  TWTLDSCELYKLSAWHTYTPLS--PTVTRRIVRR 109
            T +LD+C++ +   W T +PL   P     ++RR
Sbjct: 1147 TLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRR 1180


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 152 YVCHADNL-YSSHESSVQVTVKALTTPAKCTDNPFSLTAVS*FVASSANIITTLISAASL 328
           Y C   NL + S +S V+  +   T+P+K +++  SLT  S  + S +  + ++ S +  
Sbjct: 220 YGCKLSNLGFMSPQSPVKRELNDSTSPSKLSESSSSLTGSSSALLSQSEFLGSVPSLSDS 279

Query: 329 V 331
           +
Sbjct: 280 I 280


>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 501 KSSHDRWLHFDGTILLFSAINCVILKELYIRLSYE 605
           KSS+  WL FD   +  S+I+ V+ ++ YI L Y+
Sbjct: 394 KSSNGVWLKFDDDFVSNSSIDRVLNQQAYI-LQYK 427


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 139 SDRHSAYRQTGNTSSTYPYVVS 74
           SDR S+Y    N +ST P +VS
Sbjct: 60  SDRASSYANANNVNSTQPQLVS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,167
Number of Sequences: 5004
Number of extensions: 55195
Number of successful extensions: 140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)