Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00437
         (731 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0326 + 2372176-2373057,2373146-2373610                           29   5.0  
09_03_0014 - 11533365-11533470,11534201-11534747,11535019-11535091     28   8.8  
08_02_1609 - 28213071-28213796                                         28   8.8  
01_05_0351 + 21269339-21269527,21269758-21269961                       28   8.8  

>06_01_0326 + 2372176-2373057,2373146-2373610
          Length = 448

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +2

Query: 53  DGVRIASGDNIWISGTSVSRLTIRRVTVGDSGVYVCHADNLYSSHE 190
           DG+ +    NIWI   S+S  +   + + D    +  +++ ++ H+
Sbjct: 248 DGISVMGSSNIWIDHVSMSNCSDGLIDITDGSTAITISNSHFTKHD 293


>09_03_0014 - 11533365-11533470,11534201-11534747,11535019-11535091
          Length = 241

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +2

Query: 17  GYPQPE-NVYWSKDGVRIASGDNIWISGTSVSR---LTIRRVTVGDSGVY 154
           GY   +  + +  DG  I +G+N   SG S +R   LT+RR   G+   Y
Sbjct: 39  GYKDTDLGIVYVSDGPYIDNGENHQASGDSTTRRPYLTLRRFPTGERNCY 88


>08_02_1609 - 28213071-28213796
          Length = 241

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = -3

Query: 231 AGVVRALTVTWTLDSCELYKLSAWHTYTPLSPTVTRRIVRRETLVPLIHMLSPDAILTPS 52
           +GV + +  +++LDSC LY     H +  LS + TR   RRE    ++    P   L  S
Sbjct: 164 SGVHQPMRRSFSLDSCHLYLAIILHPH-QLSDSDTRSRSRREPKPAVLESERPSRTLRRS 222

Query: 51  LDQYT 37
              ++
Sbjct: 223 FFSFS 227


>01_05_0351 + 21269339-21269527,21269758-21269961
          Length = 130

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = -1

Query: 419 NNSPKNYFLLVKAASFCISTSSGLS*PASRQDLQQKLE 306
           NNS  + F     AS C   +S  S PASR  L +KLE
Sbjct: 11  NNSASDDFYSCGEASPCSLAASAPSCPASRLGLSKKLE 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,862,407
Number of Sequences: 37544
Number of extensions: 334042
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)