Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00435X
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    29   1.9  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    29   1.9  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 26  TNLFVCYQTNCAMIVYIGIHVANQMLLFIYIDYTLTHV*SMICIPAICNIW 178
           T L +CY T   +++ I I +     LFIY  Y +  +  ++ I   CN W
Sbjct: 5   TILSICYGTATVLLMIILIFLLTFHKLFIYSFYRIIVMDLILNIACWCNTW 55


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 26  TNLFVCYQTNCAMIVYIGIHVANQMLLFIYIDYTLTHV*SMICIPAICNIW 178
           T L +CY T   +++ I I +     LFIY  Y +  +  ++ I   CN W
Sbjct: 5   TILSICYGTATVLLMIILIFLLTFHKLFIYSFYRIIVMDLILNIACWCNTW 55


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 146 MICIPAICNIWRFDSYIFMT*FNGSLIRLPYNIEKYSLA 262
           ++ + +     RF   +F    NGSL+R PY  E Y ++
Sbjct: 36  LVTLVSCLGFLRFHQVMFQASDNGSLLRPPYRHELYEIS 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,642
Number of Sequences: 27780
Number of extensions: 266662
Number of successful extensions: 497
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)