Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00435X
         (595 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g33450.1 68415.m04100 50S ribosomal protein L28, chloroplast ...    29   3.1  
At1g23090.1 68414.m02887 sulfate transporter, putative similar t...    28   4.1  

>At2g33450.1 68415.m04100 50S ribosomal protein L28, chloroplast
           (CL28)
          Length = 143

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 291 WQRFTSQAESMIDSQYFSAEIGRTVMSLILNSAGSQYAPSPIKTRI 428
           W R TS A+SM  S   S E+G   ++  L+     Y PS +  RI
Sbjct: 10  WLRMTSSAKSMTKSTVTSKELG--FLTSQLSGLRISYTPSDVINRI 53


>At1g23090.1 68414.m02887 sulfate transporter, putative similar to
           sulfate transporter [Arabidopsis thaliana] GI:2285885;
           contains Pfam profiles PF00916: Sulfate transporter
           family, PF01740: STAS domain
          Length = 631

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 128 LTHV*SMICIPAICNIWRFDSYIFM 202
           +T V  +I +PA C+IW+ D + F+
Sbjct: 418 VTAVIGLIDLPAACHIWKIDKFDFL 442


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,401
Number of Sequences: 28952
Number of extensions: 227874
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)