Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00434
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 31 0.20
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.9
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 27 3.3
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.3
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 4.3
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 4.3
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 7.5
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 7.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 7.5
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 10.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 10.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 10.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 10.0
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 10.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 10.0
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 10.0
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 10.0
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 31.1 bits (67), Expect = 0.20
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +1
Query: 262 PAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRSH*AEAHGNVREELAPHKG 426
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.9
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 30 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 209
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 210 TEKTQKSLFDGI 245
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 741 VYFISILQNILLFNFD*YNLC 803
+YF SIL ++L+F + Y+LC
Sbjct: 296 IYFYSILSHLLVFAYALYSLC 316
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 320 EAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVIEQEKSA 451
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 214 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 83
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +1
Query: 223 RSLYSTVSRSLFEPAEA-----HRDSGEEPASGQRRYRSGEGKEQ 342
R+ YS+ S S FE + +R EEP S +RR R G G +
Sbjct: 192 RNSYSSWSGSNFESSNGSNRRRYRTQMEEPLSSKRRNRFGNGSRR 236
>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 5.7
Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Frame = +1
Query: 55 EWPAP*VTLPP*KTSPRSPQT*RVSSKA-STPAVSVTSTPMKRLCFRLLKTS--PLRRPR 225
EW P PP T P SP + S+ A S S +RL S PLRR
Sbjct: 45 EWLRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASSPPLRRLP 104
Query: 226 SLYSTVSRSLFE 261
S+ + LFE
Sbjct: 105 SVQHSTFDDLFE 116
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 594 MAAYSNPGFYSNPNDKSRLTPINSEWTP 677
+++YS+P P+ S +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 221 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 117
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +3
Query: 576 GNTAWAMAAYSNPGFYSNPNDKSRLTPINSEWTP 677
GNT + + NP F PN R+ W P
Sbjct: 90 GNTLYTYYGFDNPIFLCGPNGAPRMCGTCKCWLP 123
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +1
Query: 127 SSKASTPAVSVTSTPMKRLC-FRLLKTSPLR--RPRSLYST-VSRSLFEPAEAHRDSGEE 294
S++ STP V + + + F L ++P+R R R +S +SRS+ + + +R + EE
Sbjct: 325 STEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEE 384
Query: 295 P 297
P
Sbjct: 385 P 385
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 329 KEKNKFLNGIENFDPTKLKHTETCEKN 409
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 223 WVFSVATSSADGSTIFSLVSTSRRQL 146
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 223 WVFSVATSSADGSTIFSLVSTSRRQL 146
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 223 WVFSVATSSADGSTIFSLVSTSRRQL 146
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 353 GIENFDPTKLKHTETCEKNSLPTKDVIEQE 442
G+E P + H T +NSLP E E
Sbjct: 380 GLEVISPKEFPHRTTSSRNSLPNNTTKELE 409
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 223 WVFSVATSSADGSTIFSLVSTSRRQL 146
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 226 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 128
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 168
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 205 SPLRRPRSLYSTVSRSLFEPAEAHRDSGEEPASGQRRYRSGEGKEQ 342
S L P+S +S + P+ A + + Q+R R+ EG +
Sbjct: 117 STLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSE 162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,285,674
Number of Sequences: 5004
Number of extensions: 69245
Number of successful extensions: 247
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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