Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00434
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   2.6  
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522...    29   3.4  
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222           29   4.5  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     29   4.5  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   4.5  
09_04_0276 - 16306894-16307526,16307556-16308572                       28   7.9  
07_03_1529 + 27491963-27492465,27493045-27493154,27493384-274935...    28   7.9  

>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +3

Query: 114 DLKSQLEGFNTSCLRDVDTNEKIVL 188
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>02_05_0599 -
           30251708-30251815,30251864-30251984,30252068-30252215,
           30252303-30252480,30252587-30252625,30252704-30252799,
           30252879-30253030,30253336-30253722,30253836-30253940,
           30254083-30254098
          Length = 449

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +1

Query: 286 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-NVREELAP 417
           GEEPA      R+G G    P +HRE +  SH +  +G  +R  L P
Sbjct: 6   GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52


>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
          Length = 212

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 121 RVSSKASTPAVSVTSTPMKRLCFR 192
           +VSS++S+P  SVT+  ++ +CFR
Sbjct: 72  QVSSQSSSPVESVTTATLRPICFR 95


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 250 SLFEPAEAHRDSGEEPASGQRRYRSGEGKEQ 342
           ++ +P  A  D  E   +G RR+RSG G++Q
Sbjct: 203 AVHDPRAADDDHAEAARNGVRRWRSGSGQQQ 233


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 76  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 168
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 707 YTNYLYSIGLWRPLAVYWRKA 645
           +T Y Y+  LW P   YWR+A
Sbjct: 111 HTTYNYTDILWSPYGAYWRQA 131


>07_03_1529 +
           27491963-27492465,27493045-27493154,27493384-27493510,
           27494082-27494430,27494975-27495251,27496236-27496333,
           27498090-27498214,27498270-27498326,27498328-27498370,
           27498581-27498667,27498802-27498882,27499735-27499901,
           27499987-27500098,27500188-27500390,27500473-27500607,
           27501106-27501205
          Length = 857

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 278 ETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNSLPTKDVI 433
           +T +  PLP  D+IEA + + +    +E     KL   ++ E  S    D +
Sbjct: 806 QTLDTTPLPGSDSIEANRRRERGQRALEQRLAEKLAAVKSSEGTSQDASDKV 857


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,016,600
Number of Sequences: 37544
Number of extensions: 458024
Number of successful extensions: 1433
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)